BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932850

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G42660.1 | Symbols:  | Protein of unknown function (DUF616) ...   464    2e-130


> AT5G42660.1 | Symbols:  | Protein of unknown function (DUF616) 
| chr5:17102924-17105966 REVERSE LENGTH=1711
Length=1711

 Score =  464 bits (251),  Expect = 2e-130
 Identities = 305/330 (92%), Gaps = 7/330 (2%)
 Strand=Plus/Plus

Query  14    GTTTGTCATGGTAAGGGAAACAGTTTCGTTGCATTGTGGATTTTTTAATGCTAATGGGGG  73
             |||| ||| |||||||||||||||||| ||||||||||| ||||| ||||  ||||||||
Sbjct  720   GTTT-TCA-GGTAAGGGAAACAGTTTCTTTGCATTGTGGGTTTTTCAATGAAAATGGGGG  777

Query  74    ATTTAGGATTTTGGATAAGGATAAGAGGTTTATGCA-AACATGTGAAGTTGTAGTCTCGA  132
             ||||||||||| |||||||||||||| ||||||| | | |||||||||| || |||||||
Sbjct  778   ATTTAGGATTTCGGATAAGGATAAGAAGTTTATG-ACATCATGTGAAGTAGTGGTCTCGA  836

Query  133   CGTGTGCTTTTGGTGGTGGAGATAAAATCTTTATGAACCTATTGGAATGTCTAAGGCATC  192
             ||||||| |||||||||||||||  || ||||||||||||||||||||||||||| ||||
Sbjct  837   CGTGTGCGTTTGGTGGTGGAGAT--AACCTTTATGAACCTATTGGAATGTCTAAGACATC  894

Query  193   AAGTCAAAAGGTTTGCTATGTTGCGTTTTGGGATGAAGTTACTCTTGCAACACAAGAAGC  252
             |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  895   AAGTCAAAAGGTTTGCTATGTTGCGTTTTGGGATGAAGTTACTCTTACAACACAAGAAGC  954

Query  253   AGAGGGGTCATAAGATCAATGAGAATGATCACACTGGAAAGTGGCGTATAGTGATTGTAA  312
             |||||| |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||
Sbjct  955   AGAGGG-TCATAAGATCGATGAGAATGATCACATTGGAAAGTGGCGTATTGTGATTGTAA  1013

Query  313   AGGATCTGCCTTTTACAGACCAAAGGCTTA  342
             ||||||| ||||||||||||||||||||||
Sbjct  1014  AGGATCTTCCTTTTACAGACCAAAGGCTTA  1043



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18297460636


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5