BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932851

Length=659
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G42940.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   499    1e-140
  AT5G43200.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger)...   172    3e-42 


> AT3G42940.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Zinc finger, C3HC4 type (RING finger) family protein 
(TAIR:AT2G24480.1); Has 66 Blast hits to 66 proteins in 3 
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants 
- 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI 
BLink). | chr3:15006613-15007194 FORWARD LENGTH=582
Length=582

 Score =  499 bits (270),  Expect = 1e-140
 Identities = 478/576 (83%), Gaps = 23/576 (4%)
 Strand=Plus/Plus

Query  31   AATCACTCAACGCTGATGTTAACGTAACAGATTTGTTTCTTACTCCATCTTCAGGCTTCT  90
            ||||| ||||||| |||||||  ||||| | | ||| |||| ||||||||||||||||||
Sbjct  14   AATCAGTCAACGCCGATGTTAGTGTAACTGCTATGTCTCTTCCTCCATCTTCAGGCTTCT  73

Query  91   TAAACGAACTAATAATCATTCGAGAGAGAGAAGTCGAGGAATTTATCATAGACGACAACG  150
            |||||||  |  |||||||||||   |||||||||||| || |||||| |||||| ||||
Sbjct  74   TAAACGAGTTGTTAATCATTCGACCTAGAGAAGTCGAGAAAATTATCACAGACGAGAACG  133

Query  151  ATGATAGTGTCACGAGTCTCGGATCTTACCCGGACTCTCCTCCTTCCGACCCACTAATCT  210
             | ||| ||| || ||||| |||||||||||||| |||||||||||| ||||| | ||||
Sbjct  134  GTCATAATGTAACAAGTCTTGGATCTTACCCGGATTCTCCTCCTTCCAACCCATTTATCT  193

Query  211  ATCTCAAATTCCAAAACTTCGAACCAAACTACCTATATCAACTTGTCCATACC-CAACTC  269
             ||||||||||||| |||||||| |||||||| | ||| | ||||||||| || || |||
Sbjct  194  TTCTCAAATTCCAACACTTCGAAGCAAACTACATCTATGACCTTGTCCAT-CCGCATCTC  252

Query  270  CACGATCATGTCTTGTCCAAACAAATATCTGACCAGATTGTTATTAAAGCACAAGAGCTA  329
            |||||||||||||||||||||||||||||||| | ||||||| ||||||| ||| |||||
Sbjct  253  CACGATCATGTCTTGTCCAAACAAATATCTGATCGGATTGTTGTTAAAGCCCAACAGCTA  312

Query  330  AGAAGTGATCAAAGTTCTGATCACTTTCCACAACAACCCTTATTCATGGGAGTCTCCGTC  389
            |||||||||| ||||||||||||||| || |        |||||||||||||||||||||
Sbjct  313  AGAAGTGATCGAAGTTCTGATCACTTGCC-C--------TTATTCATGGGAGTCTCCGTC  363

Query  390  AGATTTACACGCAAGGTATACAAAGTCGTGTCTTGTAACTGTGCTCCGTCGACAACAGAT  449
            | ||||||||||||||| ||||||||| || |||| |||||||||||||||||| |||| 
Sbjct  364  ATATTTACACGCAAGGTCTACAAAGTCTTGCCTTGCAACTGTGCTCCGTCGACACCAGAC  423

Query  450  TTGGTGGACCAAGAGACCG-A-A-GAAGAAACAGAGACATGTGCTATTTGTTTGGAGGAT  506
            ||||||||  ||||| ||| | | |||||||||||| | ||||| ||||||||||| |||
Sbjct  424  TTGGTGGAGAAAGAGGCCGCAGAAGAAGAAACAGAGGCTTGTGCGATTTGTTTGGAAGAT  483

Query  507  ATGTTGGAGTCGGGAT-C--T-AT---CTA--CGGCCATATGCATAATTGTTCGCATCTG  557
            |||||||||||||||| |  | ||   | |  |  || ||||||||| |||| |||| ||
Sbjct  484  ATGTTGGAGTCGGGATTCGATGATAAACAAATCTACCGTATGCATAACTGTTGGCATATG  543

Query  558  TTTCATCAAGGTTGTCTCAACGAGTGGCTGAATCGA  593
            ||| || |||| ||| | |  |||| | ||||||||
Sbjct  544  TTTTATGAAGGATGTGTTATGGAGTCGTTGAATCGA  579


> AT5G43200.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger) 
family protein | chr5:17346141-17346764 REVERSE LENGTH=624
Length=624

 Score =  172 bits (93),  Expect = 3e-42
 Identities = 228/291 (78%), Gaps = 18/291 (6%)
 Strand=Plus/Plus

Query  21   ATGGAAACCAAATCACTC-AACGCTGATGTTAACGTAACAGATTTGTTTCTTA-CTCCAT  78
            ||||||||  ||||  || ||| | |||||| | |||| || ||||| ||  | |||| |
Sbjct  1    ATGGAAACTGAATCTTTCAAACTC-GATGTTCATGTAAAAGCTTTGTCTC-AACCTCCGT  58

Query  79   C-TTCAGGCTTCTTAAACGAAC--TAATAATCATTCGAGAGAGAGAAGTCGAGGAATTTA  135
            | || ||| ||||| || | ||  || |||||| || | | |||||||| ||||||||| 
Sbjct  59   CGTT-AGGGTTCTT-AA-GTACGGTAGTAATCAGTCAATACAGAGAAGTAGAGGAATTTC  115

Query  136  TCA-TAGACGACAACGATGATAGTGTCACGAGTCTCGGATCTTACCCGGAC--T-CTCCT  191
            ||| || || |||| ||| || ||||||||||||||||||||||||||||   | || ||
Sbjct  116  TCATTA-ACAACAAGGATAATTGTGTCACGAGTCTCGGATCTTACCCGGATGATTCTTCT  174

Query  192  CCTT--C-CGACCCACTAATCTATCTCAAATTCCAAAACTTCGAACCAAACTACCTATAT  248
             |||  | |||||||||||||| ||| | | ||| ||  ||| |||||||| || | |||
Sbjct  175  ACTTGTCACGACCCACTAATCTCTCTGACACTCCCAAGTTTCAAACCAAACGACGTCTAT  234

Query  249  CAACTTGTCCATACCCAACTCCACGATCATGTCTTGTCCAAACAAATATCT  299
            |||| | |||| ||||||||||||||||||| ||||||| | |||||||||
Sbjct  235  CAACATCTCCAGACCCAACTCCACGATCATGACTTGTCCGAGCAAATATCT  285



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31848449198


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5