BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg932851 Length=659 Score E Sequences producing significant alignments: (Bits) Value AT3G42940.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 499 1e-140 AT5G43200.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)... 172 3e-42 > AT3G42940.1 | Symbols: | BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT2G24480.1); Has 66 Blast hits to 66 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15006613-15007194 FORWARD LENGTH=582 Length=582 Score = 499 bits (270), Expect = 1e-140 Identities = 478/576 (83%), Gaps = 23/576 (4%) Strand=Plus/Plus Query 31 AATCACTCAACGCTGATGTTAACGTAACAGATTTGTTTCTTACTCCATCTTCAGGCTTCT 90 ||||| ||||||| ||||||| ||||| | | ||| |||| |||||||||||||||||| Sbjct 14 AATCAGTCAACGCCGATGTTAGTGTAACTGCTATGTCTCTTCCTCCATCTTCAGGCTTCT 73 Query 91 TAAACGAACTAATAATCATTCGAGAGAGAGAAGTCGAGGAATTTATCATAGACGACAACG 150 ||||||| | ||||||||||| |||||||||||| || |||||| |||||| |||| Sbjct 74 TAAACGAGTTGTTAATCATTCGACCTAGAGAAGTCGAGAAAATTATCACAGACGAGAACG 133 Query 151 ATGATAGTGTCACGAGTCTCGGATCTTACCCGGACTCTCCTCCTTCCGACCCACTAATCT 210 | ||| ||| || ||||| |||||||||||||| |||||||||||| ||||| | |||| Sbjct 134 GTCATAATGTAACAAGTCTTGGATCTTACCCGGATTCTCCTCCTTCCAACCCATTTATCT 193 Query 211 ATCTCAAATTCCAAAACTTCGAACCAAACTACCTATATCAACTTGTCCATACC-CAACTC 269 ||||||||||||| |||||||| |||||||| | ||| | ||||||||| || || ||| Sbjct 194 TTCTCAAATTCCAACACTTCGAAGCAAACTACATCTATGACCTTGTCCAT-CCGCATCTC 252 Query 270 CACGATCATGTCTTGTCCAAACAAATATCTGACCAGATTGTTATTAAAGCACAAGAGCTA 329 |||||||||||||||||||||||||||||||| | ||||||| ||||||| ||| ||||| Sbjct 253 CACGATCATGTCTTGTCCAAACAAATATCTGATCGGATTGTTGTTAAAGCCCAACAGCTA 312 Query 330 AGAAGTGATCAAAGTTCTGATCACTTTCCACAACAACCCTTATTCATGGGAGTCTCCGTC 389 |||||||||| ||||||||||||||| || | ||||||||||||||||||||| Sbjct 313 AGAAGTGATCGAAGTTCTGATCACTTGCC-C--------TTATTCATGGGAGTCTCCGTC 363 Query 390 AGATTTACACGCAAGGTATACAAAGTCGTGTCTTGTAACTGTGCTCCGTCGACAACAGAT 449 | ||||||||||||||| ||||||||| || |||| |||||||||||||||||| |||| Sbjct 364 ATATTTACACGCAAGGTCTACAAAGTCTTGCCTTGCAACTGTGCTCCGTCGACACCAGAC 423 Query 450 TTGGTGGACCAAGAGACCG-A-A-GAAGAAACAGAGACATGTGCTATTTGTTTGGAGGAT 506 |||||||| ||||| ||| | | |||||||||||| | ||||| ||||||||||| ||| Sbjct 424 TTGGTGGAGAAAGAGGCCGCAGAAGAAGAAACAGAGGCTTGTGCGATTTGTTTGGAAGAT 483 Query 507 ATGTTGGAGTCGGGAT-C--T-AT---CTA--CGGCCATATGCATAATTGTTCGCATCTG 557 |||||||||||||||| | | || | | | || ||||||||| |||| |||| || Sbjct 484 ATGTTGGAGTCGGGATTCGATGATAAACAAATCTACCGTATGCATAACTGTTGGCATATG 543 Query 558 TTTCATCAAGGTTGTCTCAACGAGTGGCTGAATCGA 593 ||| || |||| ||| | | |||| | |||||||| Sbjct 544 TTTTATGAAGGATGTGTTATGGAGTCGTTGAATCGA 579 > AT5G43200.1 | Symbols: | Zinc finger, C3HC4 type (RING finger) family protein | chr5:17346141-17346764 REVERSE LENGTH=624 Length=624 Score = 172 bits (93), Expect = 3e-42 Identities = 228/291 (78%), Gaps = 18/291 (6%) Strand=Plus/Plus Query 21 ATGGAAACCAAATCACTC-AACGCTGATGTTAACGTAACAGATTTGTTTCTTA-CTCCAT 78 |||||||| |||| || ||| | |||||| | |||| || ||||| || | |||| | Sbjct 1 ATGGAAACTGAATCTTTCAAACTC-GATGTTCATGTAAAAGCTTTGTCTC-AACCTCCGT 58 Query 79 C-TTCAGGCTTCTTAAACGAAC--TAATAATCATTCGAGAGAGAGAAGTCGAGGAATTTA 135 | || ||| ||||| || | || || |||||| || | | |||||||| ||||||||| Sbjct 59 CGTT-AGGGTTCTT-AA-GTACGGTAGTAATCAGTCAATACAGAGAAGTAGAGGAATTTC 115 Query 136 TCA-TAGACGACAACGATGATAGTGTCACGAGTCTCGGATCTTACCCGGAC--T-CTCCT 191 ||| || || |||| ||| || |||||||||||||||||||||||||||| | || || Sbjct 116 TCATTA-ACAACAAGGATAATTGTGTCACGAGTCTCGGATCTTACCCGGATGATTCTTCT 174 Query 192 CCTT--C-CGACCCACTAATCTATCTCAAATTCCAAAACTTCGAACCAAACTACCTATAT 248 ||| | |||||||||||||| ||| | | ||| || ||| |||||||| || | ||| Sbjct 175 ACTTGTCACGACCCACTAATCTCTCTGACACTCCCAAGTTTCAAACCAAACGACGTCTAT 234 Query 249 CAACTTGTCCATACCCAACTCCACGATCATGTCTTGTCCAAACAAATATCT 299 |||| | |||| ||||||||||||||||||| ||||||| | ||||||||| Sbjct 235 CAACATCTCCAGACCCAACTCCACGATCATGACTTGTCCGAGCAAATATCT 285 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31848449198 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5