BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932853

Length=367
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G60580.2 | Symbols:  | RING/U-box superfamily protein | chr5...   254    6e-67


> AT5G60580.2 | Symbols:  | RING/U-box superfamily protein | chr5:24354057-24356962 
FORWARD LENGTH=1872
Length=1872

 Score =  254 bits (137),  Expect = 6e-67
 Identities = 139/140 (99%), Gaps = 0/140 (0%)
 Strand=Plus/Plus

Query  1     TTCTTGGTCTTCTTGCATCCATGACCGCATCAACCATGGTTCTGGAATATTCCTATGCAG  60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1261  TTCTTGGTCTTCTTGCATCCATGACCGCATCAACCATGGTTCTGGAATATTCCTATGCAG  1320

Query  61    TAATGAGAAGATTTGTCTGGATTTACGCATCTGTCCAGTTTGCGTTGGTTGTTCTCTTCG  120
             ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  1321  TAATGAGAAGATTTGTCTGGATTTACGCATCTGTCCAGTTTGCGTTGGTCGTTCTCTTCG  1380

Query  121   CCCATATATTTTACTCTGTG  140
             ||||||||||||||||||||
Sbjct  1381  CCCATATATTTTACTCTGTG  1400



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17241837907


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5