BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932856
Length=1295
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26180.1 | Symbols: IQD6 | IQ-domain 6 | chr2:11143290-11145... 2056 0.0
> AT2G26180.1 | Symbols: IQD6 | IQ-domain 6 | chr2:11143290-11145103
REVERSE LENGTH=1515
Length=1515
Score = 2056 bits (1113), Expect = 0.0
Identities = 1234/1293 (95%), Gaps = 5/1293 (0%)
Strand=Plus/Plus
Query 1 AGATCGAATCTTTTTCATCTATGGGTGCTTCAGGGAAATGGGTCAAGTCCATTATTGGTC 60
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 102 AGATCGAAACTTTTTAATCTATGGGTGCTTCAGGGAAATGGGTCAAGTCCATTATCGGTC 161
Query 61 ACAAGAAGCTAGAGAAAGATGAAATCGAAAAGGGTAATGGGAAAAACAAGAAATGGAAGC 120
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 TCAAGAAGCTAGAGAAGGATGAAATCGAAAAGGGTAATGGGAAAAACAAGAAATGGAAGC 221
Query 121 TATGGAGGACTACTTCAGTGGATTCATGGAAGGGTTTTCGAGGTAAACATCGGTCTGAAT 180
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 222 TATGGAGGACTACTTCAGTAGATTCATGGAAGGGTTTTCGAGGAAAACATCGGTCTGATT 281
Query 181 CAGAGGGTCTTGATTCTTCAACTGTTTACTCTGCTGCTGTTGCTACTGTGCTTAGAGCTC 240
|||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 282 CAGACGGTGTTGATTCTTCTACTGTTTACTCTGCTGCTGTTGCTACTGTTCTTAGAGCTC 341
Query 241 CTCCTAAAGATTTCAAAGCTGTAAGAGAAGAATGGGCTGCTATTAGAATCCAAACCGCTT 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 342 CTCCTAAAGATTTCAAAGCTGTTAGAGAAGAATGGGCTGCTATTAGAATCCAAACCGCTT 401
Query 301 TTCGTGGATTCTTGGCGAGAAGAGCGTTGAGGGCGTTGAAAGGGATAGTGAGGTTACAAG 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 402 TTCGTGGATTCTTGGCGAGAAGAGCGTTGAGGGCATTGAAAGGGATAGTGAGGTTACAAG 461
Query 361 CTTTAGTTAGAGGAAGACAAGTGAGGAAACAAGCAGCTGTGACATTAAGATGCATGCAAG 420
||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 462 CTTTAGTGAGAGGAAGACAAGTTAGGAAACAAGCAGCTGTTACATTGAGATGCATGCAAG 521
Query 421 CTTTGGTGAGAGTACAAGCTCGTGTTAGAGCTCGTCGTGTGAGGATGACTGTTGAAGGAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 CTTTGGTGAGAGTACAAGCTCGTGTTAGAGCTCGTCGTGTGAGGATGACTGTTGAAGGAC 581
Query 481 AAGCTGTTCAAAAGCTTTTAGATGAACACAGAACCAAATCTGATCTTTTGAAAGAAGTCG 540
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 582 AAGCTGTTCAAAAGCTTTTAGATGAACATAGAACCAAATCTGATCTCTTGAAAGAAGTCG 641
Query 541 AGGAAGGTTGGTGTGATAGGAAAGGTACTGTGGATGATATTAAGTCAAAGTTGCAGAAGA 600
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 642 AGGAAGGGTGGTGTGATAGGAAAGGTACTGTGGATGATATTAAGTCAAAGTTGCAGCAGA 701
Query 601 GACAAGAAGGTGCTTTTAAGAGAGAACGTGCTTTGGCTTATGCTCTAGCTCAAAAGCAAT 660
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 702 GACAAGAAGGTGCTTTTAAGAGGGAACGTGCTTTGGCTTATGCTCTTGCTCAAAAGCAAT 761
Query 661 GGAGGTCAACTACTAGCTCAAACCTTAAGACGAATAGTTCGATTTCATATCTTAAAAGTC 720
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 762 GGAGGTCAACTACTAGCTCAAACCTTAAGACGAATAGTTCGATTTCGTATCTTAAAAGTC 821
Query 721 AAGAGTTTGATAAGAATAGTTGGGGATGGAGTTGGTTGGAGCGTTGGATGGCTGCTAGGC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 AAGAGTTTGATAAGAATAGTTGGGGATGGAGTTGGTTGGAGCGTTGGATGGCTGCTAGGC 881
Query 781 CATGGGAGACTAGACTTATGGACACTGTTGATGCCGCTGCCACGCCTCCTCCTCCGCCTC 840
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 882 CATGGGAGACTAGACTTATGGACACTGTTGATACCGCTGCCACGCCTCCTCCTCTGCCTC 941
Query 841 ATAAGCATTTGAAATCACCTGAAACCGTGGATGTTGTTAAAGTCAGAAGAAACAATGTGA 900
|||| |||||||||||||| ||||| | |||||||||| |||| ||||||||||||||||
Sbjct 942 ATAAACATTTGAAATCACCGGAAACTGCGGATGTTGTTCAAGTTAGAAGAAACAATGTGA 1001
Query 901 CCACTAGGGTATCTGCAAAACCTCCTCCTCATATGTTGTCTTCAAGTCCTGGTTATGAGT 960
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1002 CCACTAGAGTATCTGCAAAACCTCCTCCTCATATGCTGTCTTCAAGTCCTGGTTATGAGT 1061
Query 961 TTAATGAAAGCTCCGGTTCATCTTCGATTTGTACTTCAACTACACCTGTTTCTGGAAACA 1020
|||| || ||||| |||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 1062 TTAACGAGAGCTCAGGTTCATCCTCGATTTGTACTTCAACTACGCCTGTTTCTGGAAAAA 1121
Query 1021 CTGGCCTTGTTTCAGACAACTCTAGCAGTCAAGCAAAAAAGAACAAGCCAAGTTACATGA 1080
|||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1122 CTGGACTTGTTTCAGATAACTCTAGCAGTCAAGCAAAAAAGCACAAGCCAAGTTACATGA 1181
Query 1081 GCTTGACTGAATCAACAAAGGCTAAGCGAAGAACTAACCGCGGTCTCAGGCAATCTATGG 1140
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 GCTTGACTGAATCGACAAAGGCTAAGCGAAGAACTAACCGCGGTCTCAGGCAATCTATGG 1241
Query 1141 ATGAGTTTCAGTTTATGAAGAACTCTGGATTGTTTACTGGGGAGTTGAAGACTAGTCATG 1200
||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| |
Sbjct 1242 ATGAGTTTCAGTTTATGAAGAACTCTGGAATGTTTACAGGGGAATTGAAGACTAGTCCTT 1301
Query 1201 CCTCAGATCCTTCCTATGTTAGTTTCTCTAAACCACTCGTTGTTCCTACTCGATTCGAGA 1260
|||||||||||| | |||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1302 CCTCAGATCCTT--T-TGTTAGTTTCTCCAAACCACTCGGTGTTCCTACTCGATTCGAGA 1358
Query 1261 AGCTGAGAGGGTAA-TGTGACCTTGTTTAGATT 1292
||| |||||| ||| |||||||||||| |||||
Sbjct 1359 AGCCGAGAGGTTAAATGTGACCTTGTT-AGATT 1390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63704491605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5