BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932865
Length=378
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31760.1 | Symbols: ARI10, ATARI10 | RING/U-box superfamily ... 283 7e-76
AT2G31780.1 | Symbols: ATARI11, ARI11 | RING/U-box superfamily ... 279 9e-75
AT2G31770.1 | Symbols: ARI9, ATARI9 | RING/U-box superfamily pr... 198 3e-50
> AT2G31760.1 | Symbols: ARI10, ATARI10 | RING/U-box superfamily
protein | chr2:13508493-13510390 FORWARD LENGTH=1545
Length=1545
Score = 283 bits (153), Expect = 7e-76
Identities = 270/326 (83%), Gaps = 10/326 (3%)
Strand=Plus/Plus
Query 50 TCAAGGAAGAAGATATTCGATCGTAAGCATCAAATAAACGATATCGAACGAGTTTCCACG 109
||||||||||||| |||| | | |||| ||||| | |||| ||||||||||||||||||
Sbjct 137 TCAAGGAAGAAGAGATTC--T-G-AAGCTTCAAAGAGACGACATCGAACGAGTTTCCACG 192
Query 110 GTTCTC-TCCATAAATCAAGACGAAGTGATTATTCTGCTTCTTCATTATCATTGGAGTGT 168
||||| | | ||| |||| |||| |||| ||||||||||||| ||||||||| ||||
Sbjct 193 ATTCTCTTTC-TAAGCCAAGTGGAAGCGATTGTTCTGCTTCTTCACTATCATTGGTGTGT 251
Query 169 TAGCAAATTCGAAGAT-AAttttttttCGGACGAAGAGAGAATCCGTAAAACCGTTGGTA 227
||| ||| |||||||| || | ||| |||||||||||||||||||||||||||||||||
Sbjct 252 TAGTAAACTCGAAGATGAA-TGGTTTACGGACGAAGAGAGAATCCGTAAAACCGTTGGTA 310
Query 228 TACTGAAGAATCTTGTAGTTGATTTTAATGATAGAGAAGAAAATATCCAGTGTGAAATTT 287
|| | ||| | | ||| |||||| |||||| || ||||| |||| || |||| |||||
Sbjct 311 TATTAAAGGAGCCTGTCGTTGATGTTAATGGTACAGAAGTGGATATTCAATGTGGAATTT 370
Query 288 GCTTTGAATCATACACTCGAGAG-AACATCACAACAGTTTCTTGTGGTCATCCTTATTGC 346
|||||||||||||||||||| || || || | | ||||||||||||||||||||||||
Sbjct 371 GCTTTGAATCATACACTCGAAAGGAA-ATTGCTAGTGTTTCTTGTGGTCATCCTTATTGC 429
Query 347 AAAACTTGCTAGACAAGTTACATCAC 372
|| || |||| ||| ||||||||||
Sbjct 430 AAGACCTGCTGGACTGGTTACATCAC 455
> AT2G31780.1 | Symbols: ATARI11, ARI11 | RING/U-box superfamily
protein | chr2:13515199-13517413 FORWARD LENGTH=1603
Length=1603
Score = 279 bits (151), Expect = 9e-75
Identities = 268/324 (83%), Gaps = 10/324 (3%)
Strand=Plus/Plus
Query 52 AAGGAAGAAGATATTCGATCGTAAGCATCAAATAAACGATATCGAACGAGTTTCCACGGT 111
||||||||||| |||| | ||||| ||||| | |||||||||||| |||||| |||||
Sbjct 193 AAGGAAGAAGACATTC--T--TAAGCTTCAAAGAGACGATATCGAACAAGTTTCGACGGT 248
Query 112 TCTCTCCATAAATCAAGACGAAGT-GATTATTCTGCTTCTTCATTATCATTGGAGTGTTA 170
|||||| ||| |||| ||| | |||| ||||||||||||| ||||||||| ||||||
Sbjct 249 TCTCTCTGTAAGCCAAGTGGAA-TCGATTGTTCTGCTTCTTCACTATCATTGGTGTGTTA 307
Query 171 GCAAATTCGAAGAT-AAttttttttCGGACGAAGAGAGAATCCGTAAAACCGTTGGTATA 229
| ||| |||||||| || | ||| |||||||||||||||||||||||||||||||||||
Sbjct 308 GTAAACTCGAAGATGAA-TGGTTTACGGACGAAGAGAGAATCCGTAAAACCGTTGGTATA 366
Query 230 CTGAAGAATCTTGTAGTTGATTTTAATGATAGAGAAGAAAATATCCAGTGTGAAATTTGC 289
| ||| | | ||| |||||| |||||| || ||||| |||| || |||| |||||||
Sbjct 367 TTAAAGGAGCCTGTCGTTGATGTTAATGGTACAGAAGTGGATATTCAATGTGGAATTTGC 426
Query 290 TTTGAATCATACACTCGAGAG-AACATCACAACAGTTTCTTGTGGTCATCCTTATTGCAA 348
|||||||||||||||||| || || || | | ||||||||||||||||||||||||||
Sbjct 427 TTTGAATCATACACTCGAAAGGAA-ATTGCTAGGGTTTCTTGTGGTCATCCTTATTGCAA 485
Query 349 AACTTGCTAGACAAGTTACATCAC 372
|| |||| ||| ||||||||||
Sbjct 486 GACCTGCTGGACTGGTTACATCAC 509
> AT2G31770.1 | Symbols: ARI9, ATARI9 | RING/U-box superfamily
protein | chr2:13511579-13513550 FORWARD LENGTH=1632
Length=1632
Score = 198 bits (107), Expect = 3e-50
Identities = 281/359 (78%), Gaps = 35/359 (10%)
Strand=Plus/Plus
Query 47 TTCTCAAGGAAGAAGATATTCGATCGTAAGCATCAAATAAACGATATCGAACGAGTTTCC 106
|||||||||||||||| |||| || |||| ||||| | |||||||||||||||||| |
Sbjct 134 TTCTCAAGGAAGAAGACATTC--TC--AAGCTTCAAAGAGACGATATCGAACGAGTTT-C 188
Query 107 A-CGGTTCTCTC-CATAAATCAAGACGAAGTGATTATTCTGCTTCTTCATTATCATTGGA 164
| || |||| || | ||| |||| ||||||||| ||||||||||||| ||| | |||
Sbjct 189 ATCGATTCTTTCTC-TAAGCCAAGTGGAAGTGATTGTTCTGCTTCTTCACTATAACTGGT 247
Query 165 GTGTTAGCAAATTCGAAGA-TAAttttttttCGGACGAAGAGAGAATCCGTAAAACCGTT 223
||||||| ||| ||||||| || | ||| |||||||||| |||||||||||| |||||
Sbjct 248 GTGTTAGTAAAGTCGAAGACGAA-TGGTTTACGGACGAAGAAAGAATCCGTAAAGCCGTT 306
Query 224 GGTATACTGAAGAATCTTGTAGTTGATTTTAATGAT--AG----AG-------A---AG- 266
||| || ||||| | | ||| ||||| || |||| | || || | ||
Sbjct 307 GGTTTATTGAAGGAGCCTGTCGTTGACTTCAATGGTGGAGAAAAAGACAAAAAATGTAGA 366
Query 267 -AA---AATATCCAGTGTGAAATTTGCTTTGAATCATACACTCGAGAG-AACATCACAAC 321
|| |||||||| |||| |||||||||||||||||||||||||||| || || |||
Sbjct 367 AAAGTGAATATCCAATGTGGAATTTGCTTTGAATCATACACTCGAGAGGAA-ATTGCAAG 425
Query 322 AGTTTCTTGTGGTCATCCTTATTGCAAAACTTGCTAGACAAGTTACATCAC-A-AAAAA 378
|||||||||||||||||||||||||| ||||||| | | |||||||||| | |||||
Sbjct 426 GGTTTCTTGTGGTCATCCTTATTGCAAGACTTGCTGGGCTGGTTACATCACTACAAAAA 484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17794783146
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5