BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932873
Length=611
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26210.1 | Symbols: | Ankyrin repeat family protein | chr2:... 922 0.0
> AT2G26210.1 | Symbols: | Ankyrin repeat family protein | chr2:11157118-11159292
FORWARD LENGTH=1017
Length=1017
Score = 922 bits (499), Expect = 0.0
Identities = 567/599 (95%), Gaps = 7/599 (1%)
Strand=Plus/Plus
Query 16 TTTGAATGCTGTTTTCCAATAAAGTTAATTCTCTAATC-GAACAAGTTTCGAGATTGGAT 74
|||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 164 TTTGCATGCTGTTTTCCAATAAAGTTAATTCTCTAA-CAGAACAAGTTTCGAGATTGGAT 222
Query 75 ATTGACGAC-A--ATATGGGCCTTGGAGGTAGTGAAACAATGGAATGCAAGTGTGGTATG 131
||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 223 ATTGACGACAACGATATGGGACTTGGAGGTAGTGAAACAATGGAATGCAAGTGTGGTATG 282
Query 132 CCTCTGTGCATCTGTGTAGCTCCTTCCAAATCTACGGATAAACCAAACCCACCGGCTACC 191
|||||||| ||||||||||||||| ||||||| || ||||||||||||||||| ||||||
Sbjct 283 CCTCTGTGTATCTGTGTAGCTCCTCCCAAATCAACTGATAAACCAAACCCACCTGCTACC 342
Query 192 GTTGCTCCTGTGGTTCTCCCTCAGTTAAAGTCAGAGACTTCAGCAAAAAGTAAAGGTTCC 251
|||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||
Sbjct 343 ATTGCTCCTGTGGTTCTTCCTCAGTTGAAGTCAGAGGCTTCAGCAAAAAGTAAAGGTTCC 402
Query 252 ACTTCCAGCAGCAATGCTAGATCAGCTCTTAATCCTGGACTAGACACCCCCCAAAGAGAC 311
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 403 ACTTCCAGCAGCAATGCTAGATCAGCTCTAAATGCTGGACTAGACACCCCCCAAAGAGAC 462
Query 312 TATGAAGCCAGTGGGGAGGGATTAAGAGAAGCGATTAAGAATGGTGACATTGCTGGTGTG 371
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 463 TATGAAGCCAGTGGGGAGGGATTAAGAGAAGCGATTAAGAATGGTGACAGTGCTGGTGCG 522
Query 372 AAAAAGCTTTTAAAAGAGGGCGTAGATGCAAATTACCGAGACAAGCAGGGAATGTCAGTG 431
||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||| |||
Sbjct 523 AAAAAGCTTCTAAAAGAGGGCGTAGATGCAAATTACCGAGACAGGCAAGGAATGTCGGTG 582
Query 432 CTTCATCTGGCTGTCCTTTTCAACCAAACTGATATTGCATTGATGTTGATGGATCATGGA 491
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 583 CTTCATCTGGCTGTCCTGTTCAACCAAACTGATATTGCGTTGATGTTGATGGATCATGGA 642
Query 492 GCAAGCCTCGAGTACAAGAATGCACAAGGAGAAACACCGCTAGATTGTGCACCCG-CAAC 550
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 643 GCAAGCCTTGAGTACAAGAATGCACAAGGAGAAACACCGCTAGATTGTGC-CCCGGCAAC 701
Query 551 ACTGCAATACAAGATGCGGGAAAAGATGAAGTCCACTTAACAGCAGGCATCATACAGAG 609
||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct 702 ACTGCAATACAAGATGCGGGAAAAGATGAAGTCCACTTAACAGCATGCCTCAGACAGAG 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29437210142
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5