BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932896
Length=1487
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26380.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1934 0.0
AT1G33612.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 381 1e-104
AT1G33670.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 267 3e-70
> AT2G26380.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr2:11226615-11228057 REVERSE LENGTH=1443
Length=1443
Score = 1934 bits (1047), Expect = 0.0
Identities = 1319/1451 (91%), Gaps = 16/1451 (1%)
Strand=Plus/Plus
Query 22 ATGAACTCTTTTTCCTTCCACCATC-TCTTCATCTTCACCGCCGTAATCTTTCTCCGGTA 80
|||||||||| ||| ||||| || | ||||||| ||||||||||| |||||||||||||
Sbjct 1 ATGAACTCTTGTTCTTTCCA-CAACTTCTTCATTTTCACCGCCGTGATCTTTCTCCGGTG 59
Query 81 TTTAAATCCCACCACAGCTGCCAGGTGTCATACC-GATGATGAGGCAGGTCTTTTAGCCT 139
|||||| |||||| |||| |||| ||||||| || ||||||||||| ||||| ||||| |
Sbjct 60 TTTAAACCCCACCGCAGCAGCCACGTGTCAT-CCTGATGATGAGGCGGGTCTATTAGCTT 118
Query 140 TTAAATCAGGTATAACCCAAGACCCTTCGGGTATTCTAAAAACCTGGAAGAAAGGTACTG 199
||||||| ||||||||| |||| ||||| |||||||||| || ||||| ||||||||||
Sbjct 119 TTAAATCGGGTATAACCAAAGATCCTTCAGGTATTCTAAGCACTTGGAAAAAAGGTACTG 178
Query 200 ATTGCTGCTCTTGGGATGGTGTCAGTTGCCCTAACGGCAACCGCGTCGTCGTACTCACTA 259
|||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 179 ATTGCTGCTCTTGGAACGGTGTCAGTTGCCCTAACGGCAACCGTGTCGTCGTACTCACTA 238
Query 260 TCAACATAGAGTCTGATGATGCCAAAATCTTTCTCTCGGGCACTATCTCCCCGTCACTAG 319
|| ||||||||| || |||||| |||||||||||| ||||| ||||| |||||||| |
Sbjct 239 TCCGCATAGAGTCCGACGATGCCGGAATCTTTCTCTCTGGCACAATCTCTCCGTCACTGG 298
Query 320 CTAAACTCCAGCATTTGGAAGGGCTCGTCTTTATTAATCTCAAAAACATCACTGGACCAT 379
| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||
Sbjct 299 CCAAACTCCAGCATTTGGAAGGGGTCGTCTTTATCAATCTCAAAAACATCACAGGACCAT 358
Query 380 TTCC-CTCATTTCTT-TTCCGATTACCACATCTAAAGTACGTTTTCCTCGAGAATACACG 437
|||| | ||||| || ||| ||||||||||||||||||| |||| |||||||||||||||
Sbjct 359 TTCCAC-CATTT-TTATTCAGATTACCACATCTAAAGTATGTTTACCTCGAGAATACACG 416
Query 438 TCTCTCTGGTCCTCTTCCGGCCAACATCGGCGCGCTAAACCGATTAGATACATTAACCGT 497
|||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 417 TCTCTCTGGTCCTCTTCCAGCCAACATCGGCGCGCTTAACCGCTTAGATACATTAACCGT 476
Query 498 TAAAGGAAACCGGTTCAGCGGTTCGATCCCGAGCTCCATATCCAATTTAACTCGGTTAAA 557
||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||
Sbjct 477 TAAAGGAAACCGGTTCATCGGTTCAATCCCGAGTTCCATATCCAATTTAACTCGGTTAAA 536
Query 558 CTACCTCAATCTCGGCGGTAATCTCTTAACCGGAACAATACCATTAGGGATTGCTAATCT 617
|||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 537 CTACCTAAATCTTGGCGGTAATCTCTTAACCGGAACAATACCGTTAGGGATTGCTAATCT 596
Query 618 CAAGGTTATGTCTAATCTGAATCTCGACGGTAACCGTCTCTCTGGAACCATCCCGGATAT 677
|||| | || || ||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 597 CAAGCTCATTTCGAATCTTAATCTCGATGGAAACCGTCTCTCTGGAACCATCCCGGATAT 656
Query 678 TTTCAAATCCATGCCTAAGCTCCGTATCCTCACTCTCTCTCGCAACAGATTCTCCGGGAC 737
||||||||| ||| |||| || || |||||||||||||| |||||||||||||||||||
Sbjct 657 TTTCAAATCAATGACTAACCTTCGAATCCTCACTCTCTCACGCAACAGATTCTCCGGGAA 716
Query 738 GCTCCCTCCGTCGATAGCCTCACTCGCGCCGGTGCTTGCGTTC-TTGGAGCTAGGTCAGA 796
||||||||||||||| || || ||||||||||| ||||||||| ||| ||||||||||||
Sbjct 717 GCTCCCTCCGTCGATTGCATCGCTCGCGCCGGTTCTTGCGTTCCTTG-AGCTAGGTCAGA 775
Query 797 ACAATCTCTCGGGCTCGATACCGAGCTATTTATCAAGATTCATGAAGCTCGACACACTGG 856
||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 776 ACAATCTCTCGGGGTCGATACCGAGCTATTTATCAAGATTCGTGGCGCTCGACACACTGG 835
Query 857 ATCTCTCCAAGAACCAGTT-CTCCGGAGTCGTGCCAAAGAGTTTGGCCAAGCTGACAAAA 915
||||||||||||||| ||| ||| |||| |||||| |||||||||||||||||||| |||
Sbjct 836 ATCTCTCCAAGAACC-GTTTCTCTGGAGCCGTGCCGAAGAGTTTGGCCAAGCTGACTAAA 894
Query 916 ATTGCTAATATCAATCTCTCTCACAATCTTCTAACCGATCCATTCCCTGTTTT-AATCGT 974
|||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||
Sbjct 895 ATTGCTAATATCAATCTCTCTCACAATCTTCTAACCAATCCATTCCCTGTTTTGAA-CGT 953
Query 975 AAAGAATGACATCTTGACCCTAGATCTGTCGTACAACAAGTTTCACATGGAAACGATCCC 1034
|||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 954 GAAGAATTACATCTTGACTCTAGATCTGTCGTACAACAAGTTTCACATGGAAACAATCCC 1013
Query 1035 GGAATGGGTGACCTCAGCGACGATCCTTTCCTCTTTGAAGCTGGCTAAATGTGGAATCAA 1094
||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||
Sbjct 1014 GGAATGGGTGACCTCAGCGTCGATCCTCGGCTCTTTGAAGTTGGCTAAATGTGGAATCAA 1073
Query 1095 GATGAACTTAGATGATTGGAAAACAAGGCAAACTGATCTCTATGTTTCCATCGATCTTTC 1154
||||| |||||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1074 GATGAGCTTAGACGATTGGAAAACAAGGCAAACTGATCTCTACGTTTCCATTGATCTTTC 1133
Query 1155 AGACAACGAGATCTCAGGGAGTCCGGTGAGGTTCTTGAAGGAA-CAAGGGTACCTACGGG 1213
||||||||||||||||||||||| ||||||||||||||| | || | | | |||||||
Sbjct 1134 GGACAACGAGATCTCAGGGAGTCCACTGAGGTTCTTGAAGGGAGCA-GAGCAACTACGGG 1192
Query 1214 AGTTTCTAATGTCGGGGAACAAACTCCGATTCGATTTGGGGAAGCTGAGTTTTTCGAATA 1273
|||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |||| |
Sbjct 1193 AGTTTCGAATGTCGGGGAACAAACTCCGATTCGATTTGAGGAAGCTAAGTTTCTCGACGA 1252
Query 1274 CGCTCGAGACGCTTGATCTGTCAAGGAACTTAGTGTTCGGGAAAGTGCCGGCGAGGTTGG 1333
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1253 CGCTCGAGACGCTTGATCTATCAAGGAACTTAGTGTTCGGGAAAGTGCCGGCGAGGGTGG 1312
Query 1334 CCAGATTGAAGACACTAAACTTGAGTCAAAACCATCTTTGTGGGAAACTTCCGGCGACCA 1393
|| |||| |||||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1313 CCGGATTAAAGACACTTAACTTGAGTCAAAACCATCTTTGTGGGAAACTTCCGGTGACAA 1372
Query 1394 AGTTTCCAGAAAGTGTGTTTGCCGGGAACGACTGTCTCTGCGGCTCTCCACTTGGTCATT 1453
||||||||||||||||||||||||| ||||||||||| |||||||| || || ||||||
Sbjct 1373 AGTTTCCAGAAAGTGTGTTTGCCGGCAACGACTGTCTATGCGGCTCCCCGCTAAGTCATT 1432
Query 1454 GTAAAGGTTAA 1464
|||||||||||
Sbjct 1433 GTAAAGGTTAA 1443
> AT1G33612.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr1:12191312-12192849 FORWARD LENGTH=1538
Length=1538
Score = 381 bits (206), Expect = 1e-104
Identities = 638/840 (76%), Gaps = 58/840 (7%)
Strand=Plus/Plus
Query 649 AACCGTCTCTCTGGAACCATCCCGGATAT-TTTCAAATCCATGCCTA-AGCTC-CGTATC 705
||||| |||||||| ||||| || | || ||| ||||||||| | ||||| | ||
Sbjct 553 AACCGCCTCTCTGGCACCATTCCAAACATATTT-AAATCCATG-AAAGAGCTCAATTCTC 610
Query 706 CTCACTCTCTCTCGCAACAGATTCTCCGGGACG-CTCCCTCCGTCGATAGCCTCACTCGC 764
| | |||||| |||||| |||| | ||||| | || ||||||||||| || || || ||
Sbjct 611 TTGA-TCTCTCCCGCAACGGATTTTTCGGGA-GACTTCCTCCGTCGATTGCTTCGCTTGC 668
Query 765 GCCGGTGCT-TGC-GTT-CTTGGAGCTAG-GTCAGAACAATCTCTCGGGCTCGATACCGA 820
|| || | | || | | || || | | ||||||||||||||||| |||| || |
Sbjct 669 ACC--AACTCT-CTATTACCTCGATCT-GAGCCAGAACAATCTCTCGGGGACGATCCCAA 724
Query 821 GCTATTTATCAA-GATTCATGAAGCTCGACACACTGGAT-CTCTCCAAGAACCAGTTCTC 878
||||||||||| | || | | |||| |||| ||| | ||||| ||||| ||| |||
Sbjct 725 ACTATTTATCAAGGTTTGA-GGCGCTCTCCACATTGG-TACTCTCGAAGAATAAGTACTC 782
Query 879 CGGAGTCGTGCCAAAGAGTTTGGCCAAGCTGA-CAAAAATTGCTAATATCAATCTCTCTC 937
|| |||||||||| |||||| |||| |||| | || ||| | ||| | ||||||| |
Sbjct 783 GGGGGTCGTGCCAATGAGTTTCACCAATCTGATC-AACATTACCAATCTTGATCTCTCCC 841
Query 938 ACAATCTTCTAACCGATCCATTCCCTGTTTTAATCGTAAAG-AATGACATC-TTG-A-CC 993
||||||||||||| | ||||||||||| | || | |||| | | || | ||| | |
Sbjct 842 ACAATCTTCTAACTGGTCCATTCCCTG---T-ATTGAAAAGCATTAACGGCATTGAATCT 897
Query 994 CTAGATCTGTCGTACAACAAGTTTCACATGGAAACGATCCCGGAATGGGTGACCTCAG-C 1052
|| ||| |||||||||||||||||||| || ||||||| || ||||| ||| || | |
Sbjct 898 CTGGATTTGTCGTACAACAAGTTTCACCTGAAAACGATTCCAAAATGGATGATATC-GTC 956
Query 1053 GACGATCC-TTTCCTCTTTGAAGCTGGCTAAATGTGGAATCAAGATGAA-CTTAGATGAT 1110
|| |||| | | ||| |||||| |||| |||||||| | ||||| || ||||||||||
Sbjct 957 -ACCATCCATCTACTCATTGAAGTTGGCAAAATGTGGGCTGAAGAT-AAGCTTAGATGAT 1014
Query 1111 TGGAAAAC-A--AGGCAAACTGATCT-CTATGTTTCCATCGATCTTTCAGACAACGAGAT 1166
||| || | | ||| | || | || ||||| |||||||||||| || || ||||||||
Sbjct 1015 TGG-AAGCTAGCAGG-GACCT-A-CTACTATGATTCCATCGATCTGTCTGAAAACGAGAT 1070
Query 1167 CTCAGGGAGTCCGG-TGAGGTTCTTGAAGGAACAAG-GGTACCT-ACGGGAGTTTCTAAT 1223
|||||||||||||| | | |||| | || | | | ||| || | |||||| | |
Sbjct 1071 CTCAGGGAGTCCGGCT-AAGTTCCT-CAGCCAGATGAAGTATCTGA-TGGAGTTCCGAGC 1127
Query 1224 GTCGGGGAACAAACTCCGATTCGATTTGGGGAAGCTGA-GTTTTTCGAATACGCTCGAGA 1282
| | |||||||||||||||||||||||||||||||||| |||| | || || || || |
Sbjct 1128 GGCAGGGAACAAACTCCGATTCGATTTGGGGAAGCTGACGTTTGT-GAGGACTCTTGAAA 1186
Query 1283 CGCTTG-ATCTGTCAAGGAACTT-AGTGTTCGGGAAAGTGCCGGCGAGGTTGGCCAGATT 1340
| |||| || ||||||||||||| | | ||||||| ||||| ||| | || || || |
Sbjct 1187 C-CTTGGATTTGTCAAGGAACTTGA-TATTCGGGAGAGTGCTGGCAACATTTGCTGGACT 1244
Query 1341 GAAGACACTAAACTTGAGTCAAAACCATCTTTGTGGGAAACTTCCGGCGACCAAGTTTCC 1400
||||||| | ||| ||||||||||||||||||| || |||||||||| ||| ||||| ||
Sbjct 1245 GAAGACAATGAACGTGAGTCAAAACCATCTTTGCGGAAAACTTCCGGTGACAAAGTTCCC 1304
Query 1401 AGAAAGTGTGTTTGCCGGG-AACGACTGTCTCTGCGGCTCTCCACTTGGTCATTGTAAAG 1459
| |||| |||||| ||| ||||||||||| || |||||||||||| || ||||||||
Sbjct 1305 GGCCAGTGYGTTTGC-GGGTAACGACTGTCTTTGTGGCTCTCCACTTTCTCCTTGTAAAG 1363
> AT1G33670.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr1:12201963-12203408 FORWARD LENGTH=1446
Length=1446
Score = 267 bits (144), Expect = 3e-70
Identities = 628/854 (74%), Gaps = 63/854 (7%)
Strand=Plus/Plus
Query 640 CTCGACGGTAACCGTCTCTCTGGAACCATCCCGGATATTTTCAAATCCATGC--CTAAGC 697
||| |||||||||| || ||||| | | |||| || || ||||||||||||| | || |
Sbjct 547 CTCAACGGTAACCGCCTTTCTGGCATCTTCCCAGACATATTCAAATCCATGCGGC-AA-C 604
Query 698 TCCG-TATCCTCACTCTCTCTC-GCAACAGATTCTCCGG-GACGCTCCCTCCGTCGATAG 754
| || | || | | |||||| | ||||||||||||| || || || ||| | ||||| |
Sbjct 605 TTCGATTTCTTGA-TCTCTC-CAGCAACAGATTCTCTGGAAAC-CTTCCTTCATCGATTG 661
Query 755 CCTCACTCGCGCCG-GTGCTTGCGT--TCTTGGAGCTAGGTCAGAACAATCTCTCGGGCT 811
| || || || ||| | ||| | | ||| ||| | || || ||||| || |||||
Sbjct 662 CATCTCTTGCACCGACT-CTTTC-TACCCTT-GAGGTGGGCCATAACAAGCTATCGGGGA 718
Query 812 CGATACC-GAGCTATTTATCAAGATTC-ATGAAGCTCGACACACTGGATCTCTCCAAGAA 869
| || || || ||||||||| |||||| | | ||| | || | ||||||| | |||
Sbjct 719 CTATCCCGGA-CTATTTATCGAGATTCGA-GCTTCTCTCCGCATTAAATCTCTCTAGGAA 776
Query 870 CCAGTTCTCCGGAGTCGTGCCAAAGAGTTTGGCCAAGCTGACAAAAATT-GCTAATATCA 928
|| | | || |||||||| | |||||| ||||| ||||| || ||| || | |
Sbjct 777 TGGGTACACAGGGGTCGTGCCGATGAGTTTTGCCAATCTGACCAACATTATCT-TTCTTG 835
Query 929 ATCTCTCTCACAATCTTCTAACCGATCCATTCCCTGT-TTTAA-TCGTAAAGAAT-GACA 985
||||||| |||||||| || |||| |||||||||||| || || || | | | || || |
Sbjct 836 ATCTCTCCCACAATCTGCTTACCGGTCCATTCCCTGTCTTGAACTCATTAGGCATCGA-A 894
Query 986 TCTTGACCCTAGATCTGTCGTACAA-CAAGTTTCACATGGAAACGATCCCGGAATGGGTG 1044
| | ||| |||| |||||||| | | |||||| | ||||| ||||| |||||||||
Sbjct 895 ---T-A-TCTACATCTTTCGTACAACCGA-TTTCACCTTGAAACAATCCCCGAATGGGTG 948
Query 1045 ACCTCAG-CGACGATCCTTTCCTCTTTGAAGCTGGCTAAATGTGGAATCAAGATGAACTT 1103
|||| | ||| | || | | ||| |||||||| || |||||||| ||||| |||| |||
Sbjct 949 ACCT-TGTCGAAGTTCATCTACTCATTGAAGCTTGCAAAATGTGGGATCAAAATGAGCTT 1007
Query 1104 AGATGATTGGAAAACAAGGCA-A-A-CTGATCTCTATGTTTC-CATCGATCTTTCAGACA 1159
||| ||||| | | | ||| | | || | |||| || ||| ||| |||| || |
Sbjct 1008 AGACCATTGG-ATGCCA-GCAGACACCT-CTTTCTA-CCATCACATTGATTTTTCGGAAA 1063
Query 1160 ACGAGATCTCAGGGAGTCCGGTGAGGTTCTTGAAGGAACAAGGGTACCTA-CG-GGAGTT 1217
||||||||||||||||||| | ||||| || || | | || | || | |||| |
Sbjct 1064 ACGAGATCTCAGGGAGTCCAATAAGGTTTTTTAA-CCAGATGGAT-TTTATGGTGGAG-T 1120
Query 1218 TCTAATG--TCGGGGAACAAACTCCGA-TTCGATTTGGGGAAGCTGAGTTTTTCGAATAC 1274
|| ||| ||||||||||||||| | ||||| ||||||||||| | ||| |||| |
Sbjct 1121 TC-CATGCACCGGGGAACAAACTCC-AGTTCGACTTGGGGAAGCT-AAAGTTTGGAAT-C 1176
Query 1275 -GCTCG-AGACGCTTGATCTGTCAAGGAACTTAGTGTTCGGGAAAGTGCCGGCGA-GGTT 1331
|| | | || || ||| ||||||||||||| || || ||||| || |||| || || |
Sbjct 1177 TTCTTGAAAACCCTGGATTTGTCAAGGAACTTGGTATTTGGGAAGGTACCGGTGACGG-T 1235
Query 1332 GGCCAGATTGAAGACACTAAACTTGAGTCAAAACCATCTTTGTGGGAAA-CTTCCGGCGA 1390
| ||||| || ||||||||||||||||||||||||||||||| || ||| ||||| |||
Sbjct 1236 GACCAGACTGCAGACACTAAACTTGAGTCAAAACCATCTTTGCGG-AAAGCTTCCATCGA 1294
Query 1391 CCAAGTTTCCAGAAAGTG-TGTTTGCCGGGAACGACTGTCTCTGCGGCTCTCCACTTGGT 1449
| ||||| || | |||| | |||| || ||| | ||||| ||||||| ||||||| |
Sbjct 1295 CAAAGTTCCCGGCTAGTGCT-TTTGTCGATAACAAGTGTCTTTGCGGCTTTCCACTTTCT 1353
Query 1450 CATTGTAAAGGTTA 1463
| |||||||| |||
Sbjct 1354 CCTTGTAAAGCTTA 1367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73342996245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5