BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg932898 Length=385 Score E Sequences producing significant alignments: (Bits) Value AT4G37630.1 | Symbols: CYCD5;1 | cyclin d5;1 | chr4:17679279-17... 351 2e-96 > AT4G37630.1 | Symbols: CYCD5;1 | cyclin d5;1 | chr4:17679279-17681202 FORWARD LENGTH=1604 Length=1604 Score = 351 bits (190), Expect = 2e-96 Identities = 263/297 (89%), Gaps = 10/297 (3%) Strand=Plus/Plus Query 1 TATCAACATTGGATTGGAAAATGAACTTAATCACTCCTTTTCATTACTTGAAGTACTTCC 60 |||| |||||||| ||||| |||||||| |||||||||||||||||||| || ||||||| Sbjct 712 TATCCACATTGGACTGGAAGATGAACTTGATCACTCCTTTTCATTACTTCAACTACTTCC 771 Query 61 TTGCTACAATCTCTC---CCGACCATTCTGTTTCTAAAGAGTTGGTTTTGTTAAGTTCCT 117 |||||| |||||||| | ||||||||||||||||||| ||||| |||||||| |||| Sbjct 772 TTGCTAAAATCTCTCAGGACAACCATTCTGTTTCTAAAGACTTGGTGTTGTTAAGATCCT 831 Query 118 CTGATTCTCTTCTTGCTCTAACTAAAGAGATAAGTTTTACGGATTATCGACAGTTCGTTG 177 ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| Sbjct 832 CTGATTCTCTTCTTGCTTTAACTAAAGAGATAAGTTTTACGGAGTATCGACAGTTTGTTG 891 Query 178 TTGCTGTTGTTACTATAATGTTAGCTACTTCTACT---TCATCGGATATTAGATTGACGA 234 |||||| |||||||| | || ||||| ||||| || |||||||||||||||||||| | Sbjct 892 TTGCTGCTGTTACTACATTGCTAGCTTCTTCTTCTACCTCATCGGATATTAGATTGACTA 951 Query 235 GAGAAGAGATACCGAACAAGTTT----CGATCTCTTGGTGGACTTCTAATGAGAATG 287 ||||||||||| | ||||||||| |||||||||||||||||||||||||||||| Sbjct 952 GAGAAGAGATAGCTAACAAGTTTGGTTCGATCTCTTGGTGGACTTCTAATGAGAATG 1008 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18146657389 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5