BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932898

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G37630.1 | Symbols: CYCD5;1 | cyclin d5;1 | chr4:17679279-17...   351    2e-96


> AT4G37630.1 | Symbols: CYCD5;1 | cyclin d5;1 | chr4:17679279-17681202 
FORWARD LENGTH=1604
Length=1604

 Score =  351 bits (190),  Expect = 2e-96
 Identities = 263/297 (89%), Gaps = 10/297 (3%)
 Strand=Plus/Plus

Query  1     TATCAACATTGGATTGGAAAATGAACTTAATCACTCCTTTTCATTACTTGAAGTACTTCC  60
             |||| |||||||| ||||| |||||||| |||||||||||||||||||| || |||||||
Sbjct  712   TATCCACATTGGACTGGAAGATGAACTTGATCACTCCTTTTCATTACTTCAACTACTTCC  771

Query  61    TTGCTACAATCTCTC---CCGACCATTCTGTTTCTAAAGAGTTGGTTTTGTTAAGTTCCT  117
             |||||| ||||||||    | ||||||||||||||||||| ||||| |||||||| ||||
Sbjct  772   TTGCTAAAATCTCTCAGGACAACCATTCTGTTTCTAAAGACTTGGTGTTGTTAAGATCCT  831

Query  118   CTGATTCTCTTCTTGCTCTAACTAAAGAGATAAGTTTTACGGATTATCGACAGTTCGTTG  177
             ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||
Sbjct  832   CTGATTCTCTTCTTGCTTTAACTAAAGAGATAAGTTTTACGGAGTATCGACAGTTTGTTG  891

Query  178   TTGCTGTTGTTACTATAATGTTAGCTACTTCTACT---TCATCGGATATTAGATTGACGA  234
             |||||| |||||||| | || ||||| ||||| ||   |||||||||||||||||||| |
Sbjct  892   TTGCTGCTGTTACTACATTGCTAGCTTCTTCTTCTACCTCATCGGATATTAGATTGACTA  951

Query  235   GAGAAGAGATACCGAACAAGTTT----CGATCTCTTGGTGGACTTCTAATGAGAATG  287
             ||||||||||| | |||||||||    ||||||||||||||||||||||||||||||
Sbjct  952   GAGAAGAGATAGCTAACAAGTTTGGTTCGATCTCTTGGTGGACTTCTAATGAGAATG  1008



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18146657389


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5