BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932909
Length=962
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17990.1 | Symbols: TRP1, pat1 | tryptophan biosynthesis 1 |... 815 0.0
AT5G18500.1 | Symbols: | Protein kinase superfamily protein | ... 110 3e-23
> AT5G17990.1 | Symbols: TRP1, pat1 | tryptophan biosynthesis 1
| chr5:5957213-5959905 FORWARD LENGTH=1676
Length=1676
Score = 815 bits (441), Expect = 0.0
Identities = 545/594 (92%), Gaps = 11/594 (2%)
Strand=Plus/Plus
Query 206 CAGGGATCTTAACTTCGGTCAACGCCGCAGATGATGGGTCCAGTAGTTTCGGAAAAACCA 265
||||||||||||||||| ||||||||| |||||||| ||||||||||| ||||| || ||
Sbjct 170 CAGGGATCTTAACTTCGTTCAACGCCGTAGATGATGCGTCCAGTAGTTGCGGAAGAAGCA 229
Query 266 ACCTGACCGGAGTTAGAATTTATCCGACATTGAGTCGGCGACGATTCTCATCGATCCGAG 325
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 230 ACTTGACCGGAGTTAGAATTTTTCCGACATTGAGTCGGCGACGATTCTCATCGATCGGAG 289
Query 326 TTGTGTCCCCAATTCGCGGAGATGCCCAATCTTCCTTTAGTCGCAGTTCTTTCGTTTGCT 385
||| ||||||||||| || ||||| |||||||||||||||||||| ||||||| |||||
Sbjct 290 CTGTTTCCCCAATTCGTGGGGATGCTCAATCTTCCTTTAGTCGCAGCTCTTTCGCTTGCT 349
Query 386 CTCAGAATCTTGGTTTGAGCGGTGGAATCAGTGGTTTCAGTGCACCTGAAGCTCTGCCAA 445
|||||||||| |||||||||||||| | ||| |||||| ||||||||||||||
Sbjct 350 CTCAGAATCTCGGTTTGAGCGGTGG----A----TTT-AGTGCAGCTGAAGCTCTGCCAC 400
Query 446 ATGTTTGTGAAAATGCCA-CTCCTTCTTCCATCAAATCTTTCAACCAGTTGATTGAGACT 504
|| ||||| |||||| | | ||||||||||| ||||||||||||||||||||||| ||
Sbjct 401 CTGCTTGTGCAAATGCTAGC-CCTTCTTCCATTAAATCTTTCAACCAGTTGATTGAAACC 459
Query 505 TTGATTGATCGGGTTGATCTATCTGAAGCTGAGGCTGAATCATCTCTCGAGTTTTTGCTG 564
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 460 TTGATTGATCGGGTTGATCTATCTGAAACTGAGGCTGAATCATCTCTTGAGTTTTTGCTG 519
Query 565 AACGAGGCAAACGAGGCACTAATTAGTGCCTTTCTGGTTCTCCTGAGAGCTAAAGGAGAG 624
|| |||||||||||||| || || ||||||||||| ||||| ||||||||||||||||||
Sbjct 520 AATGAGGCAAACGAGGCGCTGATCAGTGCCTTTCTAGTTCTTCTGAGAGCTAAAGGAGAG 579
Query 625 ACATACGAAGAAATTGTGGGGTTGGCTAGGGAAATGATGAAGCATGCCAGGAAAGTGGAA 684
||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 580 ACATACGAAGAGATTGTGGGGTTAGCTAGGGCAATGATGAAGCATGCCAGGAAAGTGGAA 639
Query 685 GGATTAGTCGATGCTGTGGACATAGTTGGAACAGGTGGTGATGGAGCAAACACAGTCAAT 744
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 GGATTAGTTGATGCTGTGGACATAGTTGGAACAGGTGGTGATGGAGCAAACACAGTCAAT 699
Query 745 ATATCAACTGGATCTTCAATACTTGCTGCAGCTTGTGGTGCAAAAGTAGCAAAG 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 ATATCAACTGGATCTTCAATACTTGCTGCAGCTTGTGGTGCAAAAGTAGCAAAG 753
> AT5G18500.1 | Symbols: | Protein kinase superfamily protein
| chr5:6138489-6141630 FORWARD LENGTH=2007
Length=2007
Score = 110 bits (59), Expect = 3e-23
Identities = 63/65 (97%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 874 GTGCACAGAGACATTAAGTCTAGCAACATTCTGATTGATGACAAATTCAATTCTAAAATT 933
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1070 GTGCACAGAGACATTAAGTCTAGTAACATTCTGATTGATGACAAATTCAATTCTAAAATT 1129
Query 934 TTTGA 938
| |||
Sbjct 1130 TCTGA 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47069395739
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5