BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932913
Length=880
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26455.1 | Symbols: | pseudogene, similar to Ubiquitin conj... 662 0.0
> AT2G26455.1 | Symbols: | pseudogene, similar to Ubiquitin conjugating
enzyme 7 interacting protein 4 (UbcM4- interacting
protein 4) (RING finger protein 144). (Mouse), contains a Prosite:PS00518:
Zinc finger, C3HC4 type (RING finger), signature
and Pfam:PF01485 IBR domain; blastp match of 25% identity
and 5.7e-18 P-value to SP|Q925F3|U7I4_MOUSE Ubiquitin conjugating
enzyme 7 interacting protein 4 (UbcM4- interacting
protein 4) (RING finger protein 144). (Mouse) {Mus musculus}
| chr2:11253700-11254930 REVERSE LENGTH=1231
Length=1231
Score = 662 bits (358), Expect = 0.0
Identities = 420/450 (93%), Gaps = 3/450 (1%)
Strand=Plus/Plus
Query 334 CTGCTAAGTTACAAGACAACATCCTCTCAATCAAATGCCCTGTTTCTGGTTGCTCGGGGC 393
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 560 CTGCTAAGTTACAAGACAACATTCTCTCAATCAAATGCCCTGTTTCTGGTTGCTCGGGGC 619
Query 394 AGCTCGGGCCCGATAAATGCCGACAAATCCTGCCAAGAGAAGTCTTTGATCGGTGGGGAG 453
|||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 620 AGCTCGAGCCCGATAAATGCGGTCAAATCCTGCCAAGAGAAGTCTTTGATCGGTGGGGAG 679
Query 454 ATGCTCTTTGTGAGGCGGTGATTATGGGTTCAAAGAGATTCTACTGTCCATATAAGGATT 513
| |||||||| ||||||||||||||| |||||||||||||||| ||||| ||||||||||
Sbjct 680 ACGCTCTTTGCGAGGCGGTGATTATGAGTTCAAAGAGATTCTATTGTCCTTATAAGGATT 739
Query 514 GCTCTGCTTTGCTCTTCTTGGACGAGAGTGAAGT-GA-A-GATGACGGAATCGGAGTGTC 570
||||||||||||||||||||||||||||||||| || | ||||| | |||||||||||
Sbjct 740 GCTCTGCTTTGCTCTTCTTGGACGAGAGTGAAGAAGAGAAGATGAATGTATCGGAGTGTC 799
Query 571 CTCATTGCCATAGAATGGTGTGTGTAGAGTGTGGAACTAAGTGGCATCCGGAGATTACTT 630
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||| || |
Sbjct 800 CTCATTGCCATAGAATGGTGAGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACAT 859
Query 631 GCCAAGATTTTCAGAAGCTAGCCGAGAACGAAAGAGAACGAGGTGATATATTGTTGAAGA 690
|| | || ||||| |||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 860 GCGAGGAGTTTCAAAAGCTAGCCGAGAACGAAAGAGAAAGAGGGGATATATTGTTGAAGA 919
Query 691 ATATGGCAGAGAGTAACAAGTGGAAAAGATGTCCTTCTTGCAAATTTTACATTGAAAAAT 750
|||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 920 ATATGGCAGAGAGTAAGAAGTGGAGAAGATGTCCTTCTTGCAAATTCTACATTGAAAAAT 979
Query 751 CTGAGGGTTGCTTATACATGATGTGCAGGT 780
||||||||||||||||||||| ||||||||
Sbjct 980 CTGAGGGTTGCTTATACATGAAGTGCAGGT 1009
Score = 209 bits (113), Expect = 3e-53
Identities = 252/311 (81%), Gaps = 41/311 (13%)
Strand=Plus/Plus
Query 3 AAAACCCTAATCAGAAAAATGGCCACAGAGTCCATGAATGCAGCCACCGTCAATGACGAC 62
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 155 AAAACCCTAATCAGAAAAATGGCCACAGATTCCATGAATGCAGCCACCGTCAAT------ 208
Query 63 GGCGACAACAACTCCGACCGTTTCATCTTCTCAACACCTCTCTCCAG-TTATGGTTCAAC 121
| |||||||||||||||||||||| |||||||||||| | | |||||||||
Sbjct 209 ---G------ACTCCGACCGTTTCATCTTCTCCACACCTCTCTCC-GCTCGTGGTTCAAC 258
Query 122 CAAACGTGACGCCATCTCCGTCGAGGATTACGACCGTGATCGCCACCTTTATCGTCGGTT 181
||||||||||||||||||||||||||| | | | | |||| | |
Sbjct 259 CAAACGTGACGCCATCTCCGTCGAGGA-T-----C-T--TGGCCA-----A--------T 296
Query 182 TCACTCTCCTCAAACTCCATACAAATCCGAATTCTCAAACTTA-ATAGATCTTGATCAAT 240
|||||| |||||||||||| |||||||| ||| ||||| || |||||||||| ||||
Sbjct 297 ACACTCTTCTCAAACTCCATTCAAATCCGGTTTCACAAAC-TACATAGATCTTGGCCAAT 355
Query 241 ACAACGACGAAGACGATGATCTTAGAGTCCTCTGTTTCACACCAATCTCCATAGAAAAGG 300
||||||||||||| || ||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 356 ACAACGACGAAGATGACGATGTAAGAATCCTCTGTTTCACACCAATCTCCATAGAAAAGG 415
Query 301 GACAGTCCTCT 311
|||||||||||
Sbjct 416 GACAGTCCTCT 426
Score = 75.0 bits (40), Expect = 1e-12
Identities = 44/46 (96%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 777 AGGTGTGGATTGGCTTTTTGCTACAATTGTGAAACTCCATCCAAGG 822
||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1073 AGGTGTGGATTGGCTTTTTGCTACAATTGTGGAACTCCATCAAAGG 1118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42950195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5