BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932917
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40880.1 | Symbols: | WD-40 repeat family protein / zfwd3 p... 758 0.0
AT5G49200.1 | Symbols: | WD-40 repeat family protein / zfwd4 p... 676 0.0
AT2G15271.1 | Symbols: | Pseudogene of AT5G49200; WD-40 repeat... 276 2e-73
> AT5G40880.1 | Symbols: | WD-40 repeat family protein / zfwd3
protein (ZFWD3) | chr5:16378895-16381335 FORWARD LENGTH=2135
Length=2135
Score = 758 bits (410), Expect = 0.0
Identities = 627/725 (86%), Gaps = 42/725 (6%)
Strand=Plus/Plus
Query 27 AGAGTGTGTGTAAGTATTGGAAAGATGGAAACTGCAAAAGGGGCAAGCAATGCCAGTTCT 86
||||||||||||| | ||||||||||||||||||||||| |||| || ||||||||||||
Sbjct 1029 AGAGTGTGTGTAATTTTTGGAAAGATGGAAACTGCAAAAAGGGCGAGAAATGCCAGTTCT 1088
Query 87 TACACTCTTGGTCTTGTTTCCCTGGATTGGTTATAGTACCTGCTCTCGAAGGAAAAAAGA 146
||||||||||||||||||| |||||| ||| || ||| ||||||| |||||| | ||||
Sbjct 1089 TACACTCTTGGTCTTGTTTTCCTGGACTGGCCATGGTAGCTGCTCTTGAAGGACACAAGA 1148
Query 147 AGGA-ACTAAAGGGGATTACGCTTCCTCAGGGCTCAGATAAACTCTTTTCAGTTAGTAGT 205
| || | | ||||| || | ||||||||||| |||||||||||||||||||| ||| ||
Sbjct 1149 ATGATA-TTAAGGGAATCGCCCTTCCTCAGGGTTCAGATAAACTCTTTTCAGTCAGTGGT 1207
Query 206 GATGGTACATTGCGT-ATTTGGGACTGCAA---T--TC----TG---G-----------T 241
||||||||||||| | |||||||||||||| | || || | |
Sbjct 1208 GATGGTACATTGC-TAATTTGGGACTGCAATTCTGGTCAGTGTGTTCGATCCATCAACCT 1266
Query 242 -CAGGCAGAAGCAGGGTCTCTAATTAGTGAAAGCCCATGGGTTTTCCTTGGCTTGCTAAA 300
|||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||
Sbjct 1267 CCAGGCAGAAGCAGGGTCTCTAATTAGTGAAGGACCATGGGTTTTCCTTGGCTTGCCAAA 1326
Query 301 CGCTGTAAAGGCTTATAATGATCAAACCAATAAAGATTTACATCTTCAAGGGGTGGTTGG 360
|||||||||||||| ||| | ||||| || ||||||| | |||||| |||||||||||||
Sbjct 1327 CGCTGTAAAGGCTTTTAACGTTCAAAACAGTAAAGATGTGCATCTTGAAGGGGTGGTTGG 1386
Query 361 TCAAGTGCATGCAATGATTGTTGCAAACGGAATGCTTTTTTCTGGAACAAGTTCTGGTAG 420
||| ||||||||||||| || ||||||||||||||||||| |||||||||||||||||||
Sbjct 1387 TCAGGTGCATGCAATGACTGCTGCAAACGGAATGCTTTTTGCTGGAACAAGTTCTGGTAG 1446
Query 421 TATATTAGTATTGAAAGCTACAGACTCTGAGTCTGATCCATTCAAATACTTGACATCTCT 480
||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1447 TATATTAGTCTGGAAAGCTACAGACTCGGAGTCTGATCCATTCAAATACTTGACATCTCT 1506
Query 481 CCAGGGACGACATCATAGTGGTGAAGTCACTTGTTTTGTTGTTGGAGGTCAACTGCTATA 540
| | || ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1507 CGA-GG--GACATCATAGTGGTGAAGTCACTTGTTTTGTTGTTGGAGGTGAAGTGCTATA 1563
Query 541 CTATAGTTATGTCGATAGAACAATAAAGGTGTGGGATCTCAACACCCTGCAGTGTATAAT 600
|| | ||| |||||||| |||||||||||||||||||||||||||| |||| |||| |||
Sbjct 1564 CTCTGGTTCTGTCGATAAAACAATAAAGGTGTGGGATCTCAACACCTTGCAATGTAGAAT 1623
Query 601 GACCCTGAAGCA-C-TGTC---AC----A-T-CACTCTTATGTTGGGACAAATGTCTGAT 649
|||||||||||| | | || || | | ||||||||||||||||||| ||||||||
Sbjct 1624 GACCCTGAAGCAACATATCGGCACTGTCACTTCACTCTTATGTTGGGACAAGTGTCTGAT 1683
Query 650 ATCGTCTTCCTTGGATGGGACCATAAAAGTTTGGGCTTGTTCTGAAAATGGAAGCTTGAA 709
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||
Sbjct 1684 ATCGTCTTCCTTGGATGGGACCATAAAACTTTGGGCTTGTTCTGAAAATGAAAGTTTGAA 1743
Query 710 AGTTG 714
|||||
Sbjct 1744 AGTTG 1748
> AT5G49200.1 | Symbols: | WD-40 repeat family protein / zfwd4
protein (ZFWD4) | chr5:19947796-19949055 REVERSE LENGTH=1260
Length=1260
Score = 676 bits (366), Expect = 0.0
Identities = 616/727 (85%), Gaps = 56/727 (8%)
Strand=Plus/Plus
Query 35 TGTAAGTATTGGAAAGATGGAAACTGCAAAAGGGGCAAGCAATGCCAGTTCTTACACTCT 94
||||||||||||||||||||||| ||||| ||||| |||| ||||||||||||||||||
Sbjct 283 TGTAAGTATTGGAAAGATGGAAAGTGCAAGAGGGGTGAGCAGTGCCAGTTCTTACACTCT 342
Query 95 TGGTCTTGTTTCCCTGGATTGGTTATAGTACCTGCTCTCGAAGGAAAAAAGAAGGAACTA 154
|||||||||||||||||||||| || ||| || |||| ||||| | || |||||||||
Sbjct 343 TGGTCTTGTTTCCCTGGATTGGCCATGGTAGCTTCTCTTGAAGGGCACAATAAGGAACTA 402
Query 155 AAGGGGATTACGCT-T-CCTCAGGGCTCAGATAAACTCTTTTCAGTTAGTAGTGATGGTA 212
||||||| | |||| | ||| |||| |||||||||||||||||||| |||| ||||||||
Sbjct 403 AAGGGGA-T-CGCTCTCCCTGAGGGTTCAGATAAACTCTTTTCAGTCAGTATTGATGGTA 460
Query 213 CATTGCGTA-TTTGGGACTGCAA---T--TC--TG-G---------TC-A----G--GCA 247
||||||| | ||||||||||||| | || || | || | | |||
Sbjct 461 CATTGCG-AGTTTGGGACTGCAATTCTGGTCAGTGTGTACATTCCATCAACCTTGACGCA 519
Query 248 GAAGCAGGGTCTCTAATTAGTGAAAGCCCATGGGTTTTCCTTGGCTTGCTAAACGCTGTA 307
||||||||||||||||| |||||| |||| ||||||||||||||||||| ||||||| ||
Sbjct 520 GAAGCAGGGTCTCTAATCAGTGAAGGCCCTTGGGTTTTCCTTGGCTTGCCAAACGCTATA 579
Query 308 AAGGCTTATAATGATCAAACCAATAAAGATTTACATCTT----CA--AGGGGTGGTTGGT 361
||||||| ||| | |||||||| | ||||||| |||||| || |||||||||||||
Sbjct 580 AAGGCTTTTAACGTTCAAACCAGTCAAGATTTGCATCTTCAAGCAGCAGGGGTGGTTGGT 639
Query 362 CAAGTGCATGCAATGATTGTTGCAAACGGAATGCTTTTTTCTGGAACAAGTTCTGGTAGT 421
|| ||| ||||||||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct 640 CAGGTGAATGCAATGACTATTGCAAACGGAATGCTTTTTGCTGGAACAAGTTCTGGTAGT 699
Query 422 ATATTAGTATTGAAAG---CTACAGACTCTGAGTCTGATCCATTCAAATACTTGACATCT 478
|| ||||| | ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 700 ATCTTAGTCTGGAAAGCTACTACAGACTCTGAGTCTGATCCATTCAAATACTTGACATCT 759
Query 479 CTCCAGGGACGACATCATAGTGGTGAAGTCACTTGTTTTGTTGTTGGAGGTCAACTGCTA 538
|| |||||| | | | ||||||||||||||||||||| ||||||||||||| |||||
Sbjct 760 CTTGAGGGAC-A--T-A--GTGGTGAAGTCACTTGTTTTGCTGTTGGAGGTCAAATGCTA 813
Query 539 TACTATAGTTATGTCGATAGAACAATAAAGGTGTGGGATCTCAACACCCTGCAGTGTATA 598
|||| | ||| |||||||| |||||| ||| |||||||||||||||||||||| ||||||
Sbjct 814 TACTCTGGTTCTGTCGATAAAACAATCAAGATGTGGGATCTCAACACCCTGCAATGTATA 873
Query 599 ATGACCCTGAAGCA-C-T---GTCAC----A-T-CACTCTTATGTTGGGACAAATGTCTG 647
|||||||||||||| | | | ||| | | |||||||||||||||| |||||| ||
Sbjct 874 ATGACCCTGAAGCAACATACCGGCACTGTCACTTCACTCTTATGTTGGGATAAATGTTTG 933
Query 648 ATATCGTCTTCCTTGGATGGGACCATAAAAGTTTGGGCTTGTTCTGAAAATGGAAGCTTG 707
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||
Sbjct 934 ATATCGTCTTCCTTGGATGGGACCATAAAAGTTTGGGCTTATTCTGAAAACGGAATCTTG 993
Query 708 AAAGTTG 714
|||||||
Sbjct 994 AAAGTTG 1000
> AT2G15271.1 | Symbols: | Pseudogene of AT5G49200; WD-40 repeat
family protein / zfwd4 protein (ZFWD4) | chr2:6639457-6639868
REVERSE LENGTH=412
Length=412
Score = 276 bits (149), Expect = 2e-73
Identities = 264/313 (84%), Gaps = 34/313 (11%)
Strand=Plus/Plus
Query 385 AAACGGAATGCTTTTTTCTGGAACAAGTTCTGGTAGTATATTAGTATTGAAAG---CTAC 441
|||||||||||||||| |||||||||||| |||||||| ||||| | ||||| ||||
Sbjct 6 AAACGGAATGCTTTTTGCTGGAACAAGTTGTGGTAGTAGCTTAGTCTGGAAAGCTACTAC 65
Query 442 AGACTCTGAGTC---TGATCCATTCAAATACTTGACATCTCTCCAGGGACGACATCATAG 498
| |||||||||| |||||||||||||||||||||||||||| | || ||||||||||
Sbjct 66 ACACTCTGAGTCTGATGATCCATTCAAATACTTGACATCTCTCGA-GG--GACATCATAG 122
Query 499 TGGTGAAGTCACTTGTTTTGT--T---GTTG--G-AGGTCAACTGCTATACTATAGTTAT 550
||||||||||||||||||||| | |||| | ||||||| ||||||||| | ||
Sbjct 123 TGGTGAAGTCACTTGTTTTGTACTTTTGTTGTTGGAGGTCAAGTGCTATACTCT-GT--- 178
Query 551 GTCGATAGAACAATAAAGGTGTGGGATCTCAACACCCTGCAGTGTATAATGACCCTGAAG 610
||||| |||||| |||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 179 --CGATAAAACAATCAAGGTGTGGGATCTCAACACCCTGCAATGTATAATGACCTTGAAG 236
Query 611 CA-C-TG-T--CAC---A---TCACTCTTATGTTGGGACAAATGTCTGATATCGTCTTCC 659
|| | | | ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 237 CAACATACTGGCACTGTAACATCACTCTTATGTTGGGACAAATGTCTGATATCGTCTTCC 296
Query 660 TTGGATGGGACCA 672
|||||||||||||
Sbjct 297 TTGGATGGGACCA 309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34611327283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5