BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932920

Length=310
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G16640.1 | Symbols:  | Matrixin family protein | chr4:936724...  80.5    8e-15
  AT3G42433.1 | Symbols:  | transposable element gene | chr3:1455...  56.5    1e-07


> AT4G16640.1 | Symbols:  | Matrixin family protein | chr4:9367248-9368775 
REVERSE LENGTH=1528
Length=1528

 Score = 80.5 bits (43),  Expect = 8e-15
 Identities = 49/52 (94%), Gaps = 0/52 (0%)
 Strand=Plus/Minus

Query  254  TCATATATATGAAAGTTGGCCAACTCTCTCTATATGAGTGACATATCATCAC  305
            |||||||||||||||||||||||||||||| |||||| ||||| ||||||||
Sbjct  59   TCATATATATGAAAGTTGGCCAACTCTCTCCATATGATTGACACATCATCAC  8


> AT3G42433.1 | Symbols:  | transposable element gene | chr3:14558641-14560743 
REVERSE LENGTH=2103
Length=2103

 Score = 56.5 bits (30),  Expect = 1e-07
 Identities = 30/30 (100%), Gaps = 0/30 (0%)
 Strand=Plus/Minus

Query  254   TCATATATATGAAAGTTGGCCAACTCTCTC  283
             ||||||||||||||||||||||||||||||
Sbjct  1662  TCATATATATGAAAGTTGGCCAACTCTCTC  1633



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14376576214


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5