BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932929

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G26520.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   712    0.0  


> AT2G26520.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G57500.1); 
Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; 
Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:11280025-11280940 
FORWARD LENGTH=916
Length=916

 Score =  712 bits (385),  Expect = 0.0
 Identities = 449/478 (94%), Gaps = 11/478 (2%)
 Strand=Plus/Plus

Query  3    TCTCCTTCTTCTATTAACAATGGCGTCAATGCCATTGTACTGGCAACCACCACCAGCTAC  62
            ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  237  TCTTCTTCTTCTGTTAACAATGGCGTCAATGCCATTGTACTGGCAACCACCACCAGCTAC  296

Query  63   GGAGGTTCCACAACACTCATCCTCCGTCTCCTCCGCCGGAAACTCCACCATTGGTCCTTT  122
             |||||| ||||| |||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct  297  AGAGGTTTCACAAGACTCATCCTCCGTCTCCTCCGCTGGAAATTCCACCATTGGTCCTTT  356

Query  123  TATCGCCGTCTTTATAGTCGTCACCGTTCTCTGTGTTCTCGCTAGTGTTATTGGACGGCT  182
            ||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct  357  TATCGCCGTCTTTATCGTTGTCACCGTTCTTTGTGTTCTCGCTAGTGTTATTGGACGGCT  416

Query  183  TTGCTCCGGCAAAACCATCTTAGGGTATGGAGATTACGATATGGAGAGATGGGCTGAGAG  242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  417  TTGCTCCGGCAAAACCATCTTAGGGTATGGAGATTACGATATGGAGAGATGGGCTGAGAG  476

Query  243  TAGATGCGGTTCTTGTATCGACGGCCACAT-CATTCTTCACCGGCCGTCTCCGTCGCCTC  301
            |||||| ||||||||||||||||| ||||| ||| || ||||||||||||||||||||| 
Sbjct  477  TAGATGTGGTTCTTGTATCGACGGTCACATTCATCCT-CACCGGCCGTCTCCGTCGCCTA  535

Query  302  CGCCTCC---TC---AGCCTTTGCACCACACTTCTTCCGGCGTCTCTGCTGAATCTGAAG  355
            |||||||   ||   ||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct  536  CGCCTCCACCTCGTCAGCCTTTGCACCACACTTCCTCCGGCGTCTCCGCTGAATCTGAAG  595

Query  356  GACACGTGGCAGATCTAGAT---GAGACTGATGGAGAGAAACAAGACTCTTTAGACCATG  412
            ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct  596  GACACGTGGCAGATCTAGATCATGAGACTGATGGAGAGAAACAAGACTCTTTAGACCATG  655

Query  413  AGCCTCCACCACAAACACCATCAACAGCTCATTCTTGATTAGTTTTTCTCTTTTGATT  470
            ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  656  AGCCTCCACAACAAACACCATCATCAGCTCATTCTTGATTAGTTTTTCTCTTTTGATT  713



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22354195415


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5