BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg932929 Length=470 Score E Sequences producing significant alignments: (Bits) Value AT2G26520.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 712 0.0 > AT2G26520.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57500.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:11280025-11280940 FORWARD LENGTH=916 Length=916 Score = 712 bits (385), Expect = 0.0 Identities = 449/478 (94%), Gaps = 11/478 (2%) Strand=Plus/Plus Query 3 TCTCCTTCTTCTATTAACAATGGCGTCAATGCCATTGTACTGGCAACCACCACCAGCTAC 62 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 TCTTCTTCTTCTGTTAACAATGGCGTCAATGCCATTGTACTGGCAACCACCACCAGCTAC 296 Query 63 GGAGGTTCCACAACACTCATCCTCCGTCTCCTCCGCCGGAAACTCCACCATTGGTCCTTT 122 |||||| ||||| |||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 297 AGAGGTTTCACAAGACTCATCCTCCGTCTCCTCCGCTGGAAATTCCACCATTGGTCCTTT 356 Query 123 TATCGCCGTCTTTATAGTCGTCACCGTTCTCTGTGTTCTCGCTAGTGTTATTGGACGGCT 182 ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| Sbjct 357 TATCGCCGTCTTTATCGTTGTCACCGTTCTTTGTGTTCTCGCTAGTGTTATTGGACGGCT 416 Query 183 TTGCTCCGGCAAAACCATCTTAGGGTATGGAGATTACGATATGGAGAGATGGGCTGAGAG 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 TTGCTCCGGCAAAACCATCTTAGGGTATGGAGATTACGATATGGAGAGATGGGCTGAGAG 476 Query 243 TAGATGCGGTTCTTGTATCGACGGCCACAT-CATTCTTCACCGGCCGTCTCCGTCGCCTC 301 |||||| ||||||||||||||||| ||||| ||| || ||||||||||||||||||||| Sbjct 477 TAGATGTGGTTCTTGTATCGACGGTCACATTCATCCT-CACCGGCCGTCTCCGTCGCCTA 535 Query 302 CGCCTCC---TC---AGCCTTTGCACCACACTTCTTCCGGCGTCTCTGCTGAATCTGAAG 355 ||||||| || ||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 536 CGCCTCCACCTCGTCAGCCTTTGCACCACACTTCCTCCGGCGTCTCCGCTGAATCTGAAG 595 Query 356 GACACGTGGCAGATCTAGAT---GAGACTGATGGAGAGAAACAAGACTCTTTAGACCATG 412 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 596 GACACGTGGCAGATCTAGATCATGAGACTGATGGAGAGAAACAAGACTCTTTAGACCATG 655 Query 413 AGCCTCCACCACAAACACCATCAACAGCTCATTCTTGATTAGTTTTTCTCTTTTGATT 470 ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 656 AGCCTCCACAACAAACACCATCATCAGCTCATTCTTGATTAGTTTTTCTCTTTTGATT 713 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22354195415 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5