BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932956
Length=1571
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26640.1 | Symbols: KCS11 | 3-ketoacyl-CoA synthase 11 | chr... 2281 0.0
> AT2G26640.1 | Symbols: KCS11 | 3-ketoacyl-CoA synthase 11 | chr2:11329870-11331858
FORWARD LENGTH=1823
Length=1823
Score = 2281 bits (1235), Expect = 0.0
Identities = 1441/1543 (93%), Gaps = 4/1543 (0%)
Strand=Plus/Plus
Query 17 AAGCTATGGATGTTGAGCATAAGAAGCCGTTGATCGAATCATCGGATCGTAACCTTCCTG 76
||||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| || ||||
Sbjct 54 AAGCTATGGATGTAGAGCAAAAGAAACCGTTAATCGAATCATCAGATCGTAATCTACCTG 113
Query 77 ATTTCAAAAAATCAGTGAAGCTTAAGTATGTGAAGCTTGGTTACCATTACCTTATCACAC 136
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 114 ATTTCAAAAAATCAGTGAAGCTTAAATATGTGAAGCTTGGTTACCATTACCTTATCACTC 173
Query 137 ATGGAATGTACCTCTTCCTCTCCCCATTGGTGCTTGTGATCGCTGCGCAGATTTCGACAT 196
||||||||||||| |||||||||||||| || ||||| |||||||| |||||||| || |
Sbjct 174 ATGGAATGTACCTTTTCCTCTCCCCATTAGTACTTGTAATCGCTGCACAGATTTCAACTT 233
Query 197 TCTCTATCAGCGATATTCGCAACCTCTGGGAGCATCTTCAGTACAATCTTATCTCAGTGA 256
||||| ||| |||| |||| | |||||||||||||||||||||||||||||||||||||
Sbjct 234 TCTCTGTCACCGATCTTCGTAGCCTCTGGGAGCATCTTCAGTACAATCTTATCTCAGTGG 293
Query 257 TTGTTTGTTCTATGCTTCTTGTGTTT-TTAATGACTATTTACTTCATGACTCGGCCGCGT 315
|||||||||||||||| ||||| ||| |||||||||||||||||||||||||| || |||
Sbjct 294 TTGTTTGTTCTATGCTGCTTGT-TTTCTTAATGACTATTTACTTCATGACTCGACCACGT 352
Query 316 CCTGTGTACTTGGTGGACTTCTCGTGCTTTAAACCCGATGAGTCCCGTAAATGCACTAAA 375
||||| ||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct 353 CCTGTCTACTTGGTGAACTTCTCGTGCTTTAAACCCGATGAGTCACGAAAATGCACTAAA 412
Query 376 AAGATCTTTATGGATCGTTCTAAACTCACTGGTTCTTTCACAGAGGAGAATCTTGAGTTC 435
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 413 AAGATCTTTATGGATCGTTCTAAACTCACTGGCTCTTTCACAGAGGAGAATCTTGAGTTC 472
Query 436 CAGCGCAAGATTCTACAACGTTCGGGGCTTGGTGAATCTACTTATTTACCTGAGGCTGTT 495
||||| ||||||||||||||||||||||| || ||||| ||||| ||||| ||||||||
Sbjct 473 CAGCGTAAGATTCTACAACGTTCGGGGCTCGGGGAATCGACTTACTTACCCGAGGCTGTA 532
Query 496 CTCAATGTTCCTCCTAACCCGTGTATGAAAGAAGCTCGAAAAGAGGCGGAGACTGTGATG 555
|| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 533 CTTAATGTTCCGCCTAACCCGTGTATGAAAGAAGCTCGAAAAGAGGCCGAGACTGTTATG 592
Query 556 TTTGGAGCTATTGATGAACTTCTTGCCAAGACGAATGTCAACCCGAAGGATATTGGGATC 615
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 593 TTTGGAGCTATTGATGAGCTTCTTGCGAAGACGAATGTGAACCCGAAGGATATTGGGATC 652
Query 616 TTGATTGTTAATTGTAGTTTGTTCAACCCGACACCTTCGTTATCTGCTATGGTTGTTAAT 675
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 653 TTGATTGTTAACTGTAGTTTGTTTAACCCGACACCTTCGTTATCTGCTATGGTTGTTAAT 712
Query 676 CACTATAAGCTCCGTGGGAACATACTCAGTTACAACTTGGGAGGAATGGGTTGCAGTGCT 735
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 713 CACTATAAGCTCCGCGGGAATATACTTAGTTACAACTTGGGAGGAATGGGTTGCAGTGCT 772
Query 736 GGTTTGATCTC-AGTTGATCTTGCTAAACATCTTCTTCACTCCATTCCTAACACTTATGC 794
|||||||| || | |||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 773 GGTTTGATTTCTA-TTGATCTTGCTAAACATCTTCTTCACTCTATTCCCAACACTTATGC 831
Query 795 AATGGTGATTAGCATGGAGAATATTACATTGAACTGGTATTTCGGGAATGACCGCTCGAA 854
|||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 832 AATGGTGATTAGTATGGAGAACATTACGTTGAACTGGTATTTCGGGAATGACCGGTCGAA 891
Query 855 GCTTGTTTCCAATTGTCTTTTTAGAATGGGAGGTGCAGCGATTCTTCTCTCTAACAAACG 914
||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||| |
Sbjct 892 GCTTGTTTCTAATTGTCTGTTTAGAATGGGAGGTGCAGCGATTCTTCTTTCGAACAAAAG 951
Query 915 ATGGGACAGAAGAAGATCGAAATACGAGCTTGTTGATACGGTTAGAACCCACAAGGGAGC 974
|||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 952 ATGGGACAGAAGAAGATCGAAATATGAGCTTGTTGATACGGTTAGGACTCACAAGGGAGC 1011
Query 975 TGATGATAAGTGCTTTGGTTGCATAACTCAAGAAGAGGATTCCGCAAGTAAGATTGGTGT 1034
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 TGATGATAAGTGTTTTGGTTGCATAACTCAAGAAGAGGATTCCGCAAGTAAGATTGGTGT 1071
Query 1035 TACCCTGTCGAAAGAACTAATGGCTGTTGCTGGTGATGCTCTAAAGACAAACATCACAAC 1094
|||| ||||||||||||| ||||||||||| |||||||||||||||||||| || || ||
Sbjct 1072 TACCTTGTCGAAAGAACTTATGGCTGTTGCGGGTGATGCTCTAAAGACAAATATTACGAC 1131
Query 1095 GTTAGGACCACTGGTTCTGCCGACATCTGAACAGCTTCTATTCTTTGCAACATTAGTGGG 1154
|||||||||||||||| | |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1132 GTTAGGACCACTGGTTTTACCGACATCTGAACAGCTTCTGTTCTTTGCAACGTTAGTGGG 1191
Query 1155 ACGAAAACTCTTCAAGATGAAGATCAAGCCATACATCCCAGACTTCAAACTAGCGTTTGA 1214
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1192 AAGAAAACTCTTCAAGATGAAGATCAAGCCTTACATCCCAGACTTCAAACTAGCGTTTGA 1251
Query 1215 GCATTTCTGCATCCACGCGGGAGGAAGAGCTGTTCTTGATGAATTGGAGAAGAACTTGAA 1274
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1252 GCATTTCTGCATCCACGCAGGAGGGAGAGCTGTTCTTGATGAATTGGAGAAGAACTTGAA 1311
Query 1275 ACTCACAGATTGGCACATGGAACCATCAAGAATGACACTCTACCGTTTTGGTAACACATC 1334
||||||||| ||||| ||||| || || || |||||||||||||||||||||||||| ||
Sbjct 1312 ACTCACAGAGTGGCATATGGAGCCCTCGAGGATGACACTCTACCGTTTTGGTAACACGTC 1371
Query 1335 CAGTTCTTCTTTGTGGTATGAATTAGCATATAGTGAGGCAAAAGGAAGGATCAAGAAAGG 1394
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1372 CAGTTCTTCTTTGTGGTATGAATTAGCATATAGTGAGGCCAAAGGAAGGATCAAGAAAGG 1431
Query 1395 CGATAGAATTTGGCAGATAGCTTTTGGTTCTGGTTTCAAGTGCAACAGCTCAGTTTGGCG 1454
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |
Sbjct 1432 TGATAGAATTTGGCAGATAGCTTTTGGTTCGGGGTTCAAGTGCAACAGCTCGGTTTGGAG 1491
Query 1455 AGCGGTAAGGTCAGTCAACCCTAAAAAAGAGAAGAACCCGTGGATGGATGAAATTCATGA 1514
|||||||||||| || |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1492 AGCGGTAAGGTCGGTAAACCCTAAGAAAGAGAAGAACCCATGGATGGATGAAATTCATGA 1551
Query 1515 GTTCCCAGTTGATGTCCCCAAGGTCTCAACAATCTAGAAACCA 1557
|||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1552 GTTCCCAGTTGAAGTCCCCAAGGTCTCCACAATCTAGAAACCA 1594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77559842025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5