BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932960
Length=1648
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24748.1 | Symbols: | pseudogene of transcriptional factor ... 778 0.0
AT2G24645.1 | Symbols: | Transcriptional factor B3 family prot... 527 1e-148
> AT2G24748.1 | Symbols: | pseudogene of transcriptional factor
B3 family protein | chr2:10536845-10537829 FORWARD LENGTH=772
Length=772
Score = 778 bits (421), Expect = 0.0
Identities = 657/766 (86%), Gaps = 36/766 (5%)
Strand=Plus/Plus
Query 78 ATTCCTGTGGCTTTTTTCTTTAAGAATATAGAAGGAAGAAATGAGCAGAAGACGGCGGAG 137
|||||| | || || |||||| |||||||| ||||||||||||||||||||||||| |||
Sbjct 4 ATTCCTTTAGCCTTCTTCTTTGAGAATATATAAGGAAGAAATGAGCAGAAGACGGCAGAG 63
Query 138 TTAAGATCAGACGCATCGAACAAAACCTGGAAAGTGAAAATAGATGGCCAGAGACTTACA 197
||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 64 TTAAGGTCAGATGCATCCAAGAAAACCTGGAAAGTGAAAATAGATGGCCAGAGACTTACC 123
Query 198 AACGGTTGGAGAGACTTTGCTCTCGCACATGATCTTCGAATCGGTGACATCATTGTTTTC 257
|||||||||| ||| |||||||||||||||||| ||||| | || |||||||||||||||
Sbjct 124 AACGGTTGGAAAGAGTTTGCTCTCGCACATGATGTTCGACTAGGCGACATCATTGTTTTC 183
Query 258 AGACAAGAGAGAGACATGACTTTCCACGTTACAATGTTGGGACCTAGTTGTTGTGAGATT 317
||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 184 AGACAAGAGAGTGGCATGACTTTCCACGTTACAATGTTAGGACCTAGTTGTTGTGA--TT 241
Query 318 CAATATGTGTCTTGTTTAGACAACCAGAACAACCGCGGGACGATTCAAAGGAAGAAGAAA 377
||||||||||| | |||||||||||||||||||| ||||| |||||||||||| ||||||
Sbjct 242 CAATATGTGTCGTCTTTAGACAACCAGAACAACCTCGGGAAGATTCAAAGGAAAAAGAAA 301
Query 378 AAAGCCGAGTCTTCACTAGATCTCTCTTGTTTCGTGGCTAATGTCACTCCTTCGAATCTA 437
|||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 302 GAAGCAGAGTCTTCACTAGATCTCTCTTGTTTTGTGGCTAATGTCACGCCTTCGAATCTA 361
Query 438 CGTTATGACTCACTGAATCTTCCAATGTGTTTTGTGAGGGCAAATGGTCTAGACAATAGA 497
| | | || | || | | || ||||||||||| |||||||||||||||| ||
Sbjct 362 C---A--A-TC--T---TC--C-ATTGAGTTTTGTGAGG-CAAATGGTCTAGACAAAAGG 406
Query 498 TGTGGCGAGATGATTCTGATCAACGAAAAGGGCAGATCATGGACTGTAG-CTTTGAAACG 556
||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||
Sbjct 407 TGTGGAGAGATGATTCTGATCAACGAAAAAGGCAGATCATGGACTGTAGACTT-GAAACG 465
Query 557 AAAGAAATCATGTGCAACTACTTACATCAGACGAGGATGGAGAAATTTCTGTAATGCTAA 616
|||||| |||||| ||||||||||||||| |||||||||| ||| |||||||||||| ||
Sbjct 466 AAAGAACTCATGTCCAACTACTTACATCAAACGAGGATGGGGAAGTTTCTGTAATGCCAA 525
Query 617 TGGACTTAGAGCTGGAAGTTTCTTCACTTTCAAACTGATCGAAAGGGGAGGAACTCTGGG 676
|||| ||||||||||||||||||| | |||||||||| || |||| || ||||||| ||
Sbjct 526 TGGATTTAGAGCTGGAAGTTTCTTTAGTTTCAAACTGTTCCAAAGAGGTGGAACTCCAGG 585
Query 677 TTTACGTTTAGCCCACAGAGAGCTAGAAGAAGAAGGTAATGCAATAGACAA-CAA-CCAA 734
|||||||| | ||||||||||| |||||||||||| || | ||||||| | | |||
Sbjct 586 TTTACGTTCATCCCACAGAGAGGTAGAAGAAGAAGCTATTACAATAGAGTATCTTTCCA- 644
Query 735 GACAAGAGAAGCTCAC-GTGAATGCACaaaaaaaaa-aaTCTT---GATATGGAAAGCTT 789
|| || | || || || || | ||| | | | || || ||||||||||| ||
Sbjct 645 --CA-GA-AC-CTGACCGT-AA--C-CAAGACGAGAGAAGCTCACAGATATGGAAAGTTT 695
Query 790 CTTCTTTACCATCTCAAAACCGTTTTGTGACAGTAACTCTTACACC 835
|||||| ||||||||||||||||||| ||||||||||||||| |||
Sbjct 696 CTTCTTCACCATCTCAAAACCGTTTTATGACAGTAACTCTTAAACC 741
> AT2G24645.1 | Symbols: | Transcriptional factor B3 family protein
| chr2:10480532-10482795 REVERSE LENGTH=1814
Length=1814
Score = 527 bits (285), Expect = 1e-148
Identities = 563/692 (81%), Gaps = 40/692 (6%)
Strand=Plus/Plus
Query 14 TTTGAGAATGGCAAATCAACATTTCTTCAAGCCACTTCTTCCTGGCTTTCACAGCCACTT 73
||||| |||||| |||||||||||||||||||| |||||||||||||| |||| ||||||
Sbjct 139 TTTGAAAATGGCGAATCAACATTTCTTCAAGCCTCTTCTTCCTGGCTTCCACACCCACTT 198
Query 74 GACG-ATTCCTGTGGCTTTTTTCTTTAAGAATATAGAAGGAAGAAATGAGCAGAAGACGG 132
|| | || ||||| || || ||||| |||||||||||||||||| |||||||||||||||
Sbjct 199 GA-GAATACCTGTAGCCTTCTTCTTGAAGAATATAGAAGGAAGATATGAGCAGAAGACGG 257
Query 133 CGGAGTTAAGATCAGACGCATCGAACAAAACCTGGAAAGTGAAAATAGATGGCCAGAGAC 192
||||| | |||||||| || || || | ||| ||| ||||||| |||||||| |||||||
Sbjct 258 CGGAGCTGAGATCAGATGCGTCAAAGATAACTTGGGAAGTGAAGATAGATGGACAGAGAC 317
Query 193 TTACAAACGGTTGGAGAGACTTTGCTCTCGCACATGATCTTCGAATCGGTGACATCATTG 252
| || ||||||||| ||| ||||||||| ||||||||||||||||||||||||| |||
Sbjct 318 TCACTGACGGTTGGAAAGAGTTTGCTCTCTCACATGATCTTCGAATCGGTGACATTGTTG 377
Query 253 TTTTCAGACAAGAGAGAGACATGACTTTCCACGTTACAATGTTGGGACCTAGTTGTTGTG 312
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 378 TTTTCAGACAAGAGAGAGATATGTCTTTCCACGTTACAATGTTGGGACCTAGTTGTTGTG 437
Query 313 AGATTCAATATGTGT-CTTGTTTAGACAACCAGA-ACAACCGCG-G--GACGAT---TC- 363
|||| ||||||| || | |||| |||| | ||| | |||| || | || || ||
Sbjct 438 AGATCCAATATG-GTTCGTGTTCAGACGAGGAGAGA-AACCTCGAGAAGAAGAAGAATCC 495
Query 364 AAA-GGAAGAAGAAAAAAGCCGAGTCTTCACTAGATCTCT-CTTGTTTCGT-GGCTAATG 420
||| ||| |||| ||| | | ||||||||||||| || ||||||| | ||||||||
Sbjct 496 AAATGGA-GAAGCAAA--GTCT--TCTTCACTAGATC-CTTCTTGTTTT-TCGGCTAATG 548
Query 421 TCACTCCTTCGAATCTACGTTATGACTCACTGAATCTTCCAATGTGTTTTGTGAGGGCAA 480
| | ||||||| |||||||||||||| | || | |||||||| |||||||||||| ||
Sbjct 549 TGGCGCCTTCGAGTCTACGTTATGACTTAATGCTTTTTCCAATGGGTTTTGTGAGGGAAA 608
Query 481 ATGGTCTAGACAATAGATGTGGCGAGAT-GATTCTGATCAACGAAAAGGGCAGATCATGG 539
||||| ||| | ||| ||| |||| | ||||||| || ||||||||||||||||||
Sbjct 609 ATGGTGTAGTCG---GATCTGGAAAGATTG-TTCTGATGAATGAAAAGGGCAGATCATGG 664
Query 540 ACTGT-AGCTTTGAAACGAAAGAAATCATGTGCAACTACTT-ACATCAGACGAGGATGGA 597
| | | | ||| || || |||| |||||| | ||| | || | | ||| |||| |||
Sbjct 665 AATTTTAACTT-GAGACAAAAGCCATCATGCGGAAC-AGTTTATGTTAGAGGAGGGTGGG 722
Query 598 -GAAATTTCTGTAATGCTAATGGACTT-AGAGCTGGAAGTT-TCTTCACTTTCAAACTGA 654
|| ||| ||| |||| ||||||||| | ||||||| | | ||| ||||||||||||||
Sbjct 723 TGAGTTTT-TGTGATGCCAATGGACTTCA-AGCTGGA-GATATCTACACTTTCAAACTGA 779
Query 655 TCGAAAGGGGAGGAACTCTGGGTT-TACGTTT 685
|| |||| ||||||||||| | || |||||||
Sbjct 780 TCAAAAGAGGAGGAACTCTTG-TTCTACGTTT 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81425283990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5