BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932962

Length=229
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G02280.1 | Symbols:  | Flavodoxin family protein | chr3:4534...   289    9e-78
  AT3G24710.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   167    4e-41


> AT3G02280.1 | Symbols:  | Flavodoxin family protein | chr3:453421-457841 
FORWARD LENGTH=2201
Length=2201

 Score =  289 bits (156),  Expect = 9e-78
 Identities = 220/247 (89%), Gaps = 19/247 (8%)
 Strand=Plus/Plus

Query  1     TGCAACATAAGATCCGCGAAATGAGCAAGAAAGTTTGGGATTTACTTTGTGATGGAGCCG  60
             |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct  1796  TGCAACATAAGATCCGCGAAATGAGCAAGAGAGTTTGGGATTTACTCTGTGATGGAGCCG  1855

Query  61    CTGTTTACGTGGCGGGCTCGTCCAC-AAAACTGCCTTGTGATGTGATGTCGGCTTTGGAA  119
             |||||||||||||||||||||| || |||| ||||||||||||||||||||||||| |||
Sbjct  1856  CTGTTTACGTGGCGGGCTCGTCGACGAAAA-TGCCTTGTGATGTGATGTCGGCTTTCGAA  1914

Query  120   GACATTGTGTCGGAG-A--CAGGAGGA---TCA--G-------CTTCACGGTTGCTCAAG  164
             || |||||||||||| |  ||||||||   |||  |       ||||||||| ||| |||
Sbjct  1915  GATATTGTGTCGGAGGAGACAGGAGGAGGATCAAAGGAGGTAGCTTCACGGTGGCTTAAG  1974

Query  165   GCTTTGGAGAAGGCAGGGAGGTACAATGTTGAAGCTTGGTCTTAACTCT--AACTTCCTT  222
             |||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct  1975  GCTTTGGAGAAGACAGGGAGGTACAATGTTGAAGCTTGGTCTTAACTCTCTAACTTCCTT  2034

Query  223   CATATGT  229
             |||||||
Sbjct  2035  CATATGT  2041


> AT3G24710.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
endomembrane system; BEST Arabidopsis thaliana protein match 
is: Flavodoxin family protein (TAIR:AT3G02280.1); Has 175 Blast 
hits to 175 proteins in 21 species: Archae - 0; Bacteria 
- 6; Metazoa - 0; Fungi - 0; Plants - 168; Viruses - 0; Other 
Eukaryotes - 1 (source: NCBI BLink). | chr3:9024167-9024367 
REVERSE LENGTH=201
Length=201

 Score =  167 bits (90),  Expect = 4e-41
 Identities = 170/205 (83%), Gaps = 20/205 (10%)
 Strand=Plus/Plus

Query  21   ATGAGCAAGAAAGTTTGGGATTTACTT-TGTGATGGAGCCGCT-GTTTACGTGGCGGGCT  78
            |||||||||||||||||||||||  || ||||||||||| | | ||||| ||||| ||||
Sbjct  1    ATGAGCAAGAAAGTTTGGGATTT-GTTATGTGATGGAGCTG-TCGTTTATGTGGCTGGCT  58

Query  79   CGTCCACA-AAACTGCCTTGTGATGTGATGTCGGCTTT-GGAAGACATTGTGTC-G--GA  133
            |||| ||| ||| |||| | |||||| ||||||||||| ||  || |||||||| |  ||
Sbjct  59   CGTCGACAGAAA-TGCCATCTGATGTAATGTCGGCTTTAGG-GGAGATTGTGTCAGAAGA  116

Query  134  GACAGGAGGATC-----A----GCTTCACGGTTGCTCAAGGCTTTGGAGAAGGCAGGGAG  184
            ||| ||||||||     |    |||||||||  ||||||||||||||||||||||  |||
Sbjct  117  GACGGGAGGATCAAAGGAGGTTGCTTCACGGCGGCTCAAGGCTTTGGAGAAGGCACAGAG  176

Query  185  GTACAATGTTGAAGCTTGGTCTTAA  209
            |||||||||||||||||||||||||
Sbjct  177  GTACAATGTTGAAGCTTGGTCTTAA  201



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10304888545


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5