BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932963
Length=1778
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26690.1 | Symbols: | Major facilitator superfamily protein... 2828 0.0
AT2G26692.1 | Symbols: | other RNA | chr2:11350719-11351293 FO... 178 2e-43
> AT2G26690.1 | Symbols: | Major facilitator superfamily protein
| chr2:11347147-11350993 REVERSE LENGTH=2011
Length=2011
Score = 2828 bits (1531), Expect = 0.0
Identities = 1695/1775 (95%), Gaps = 7/1775 (0%)
Strand=Plus/Plus
Query 7 GATATAGAAGGAAAATGGAGAGCAAAGGGAGTTGGACAGTGGCTGATGCCGTAGACTACA 66
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 GATATAGAA-AAAAATGGAGAGCAAAGGGAGTTGGACAGTGGCTGATGCCGTAGACTACA 123
Query 67 AAGGCCGACCTGCCGACAAATCCAAAACCGGTGGCTGGATCACTGCAGCTCTCATTCTTG 126
|||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 124 AAGGACGACCTGCCGACAAATCCAAAACCGGTGGTTGGATCACTGCCGCTCTCATTCTTG 183
Query 127 GGATAGAAGTTGTGGAGAGGCTATCAACAATGGGAATAGCAGTGAATTTGGTAACATATT 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 GGATAGAAGTTGTGGAGAGGCTATCAACAATGGGAATAGCAGTGAATTTGGTAACATATT 243
Query 187 TGATGGAGACAATGCATCTCCCAAGTTCAACTTCTGCCAATATTGTCACTGACTTCATGG 246
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 244 TGATGGAGACAATGCATCTCCCAAGTTCAACCTCTGCCAACATTGTCACTGATTTCATGG 303
Query 247 GCACTTCCTTCCTCCTTTGCCTGCTCGGCGGCTTTCTCGCTGACTCCTTCCTCGGACGTT 306
|||||||||||||||| ||| ||||||| || ||||||||||||||||||||||| ||||
Sbjct 304 GCACTTCCTTCCTCCTATGCTTGCTCGGTGGTTTTCTCGCTGACTCCTTCCTCGGCCGTT 363
Query 307 TCAAAACCATC-GCTATTTTCTCAACCATTCAAGCTCTGGGAACTGGTGCACTAGCGGTA 365
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 364 TCAAAACCATCGGC-ATTTTCTCAACCATTCAAGCTCTGGGAACTGGTGCTCTAGCGGTA 422
Query 366 GCAACGAAGCTGCCGGAGCTACGTCCACCAACATGCCATCATGGGGAAGCTTGCATACCC 425
||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 423 GCAACTAAGCTGCCAGAGCTACGTCCACCAACATGCCATCATGGAGAAGCTTGCATACCC 482
Query 426 GCGA-CGAGCTTCCAAATGACTATTCTTTATATTTCGCTTTACCTTATAGCTCTTGGAAC 484
|||| || |||||||||||| ||||||||| ||||||||||||||||||| ||||||||
Sbjct 483 GCGACCG-CCTTCCAAATGACAATTCTTTATGTTTCGCTTTACCTTATAGCCCTTGGAAC 541
Query 485 TGGTGGCCTTAAGTCTAGTATCTCCGGATTTGGATCTGACCAGTTTGATGACAAAGATCC 544
|||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 542 TGGTGGTCTTAAATCTAGTATCTCTGGATTTGGGTCTGACCAGTTTGATGACAAAGATCC 601
Query 545 TAAAGAAAAAGCTCACATGGCTTTCTTCTTCAACAGGTTCTTCTTCTTCATTAGCATGGG 604
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 602 TAAAGAGAAAGCTCACATGGCTTTCTTCTTCAACAGGTTCTTCTTCTTTATTAGTATGGG 661
Query 605 GACATTGTTGGCTGTGACTGTTTTAGTTTACATGCAAGATGAAGTGGGAAGATCTTGGGC 664
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GACATTATTGGCTGTGACTGTTTTAGTTTACATGCAAGATGAAGTGGGAAGATCTTGGGC 721
Query 665 TTATGGAATCTGCACTGTGTCTATGGCTATAGCAATTGTAATATTCTTGTGTGGGACTAA 724
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 722 TTATGGAATCTGCACTGTCTCTATGGCTATAGCTATTGTAATATTCTTGTGTGGGACTAA 781
Query 725 GAGATACCGTTATAAGAAGAGCCAAGGAAGTCCCGTTGTGCAAATCTTTCAGGTTATAGC 784
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 782 GAGATACCGTTATAAGAAGAGCCAAGGAAGTCCCGTTGTGCAAATATTTCAGGTCATAGC 841
Query 785 AGCTGCGTTCAGAAAGAGGAAAATGGAACTGCCTCAAAGCATTGTTTATCTTTATGAAGA 844
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 842 AGCTGCGTTCCGAAAGAGGAAAATGGAACTACCTCAAAGCATTGTTTATCTTTATGAAGA 901
Query 845 TAATCCTGAGGGCATAAGAATTGAACATACTGATCAGTTTCACTTGTTGGACAAGGCTGC 904
||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 902 TAACCCTGAAGGCATTAGAATTGAACATACTGATCAGTTTCACTTGTTGGACAAGGCGGC 961
Query 905 CATAGTTGCAGAAGGAGATTTCGAACAAACCCTAGACGGAGTCGCAATTCCAAACCCTTG 964
||||||||||||||||||||| ||||||||||| || ||||| ||||| |||||||||||
Sbjct 962 CATAGTTGCAGAAGGAGATTTTGAACAAACCCTTGATGGAGTTGCAATCCCAAACCCTTG 1021
Query 965 GAAGCTAAGCTCAGTGACCAAAGTTGAGGAAGTGAAAATGATGGTTAGGCTTTTGCCTAT 1024
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1022 GAAGCTAAGCTCAGTGACCAAAGTTGAGGAAGTAAAAATGATGGTTAGGCTTTTGCCTAT 1081
Query 1025 TTGGGCAACAACTATAATTTTCTGGACAACATATGCCCAAATGATTACATTCTCGGTTGA 1084
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1082 TTGGGCAACAACTATAATTTTTTGGACAACATATGCCCAAATGATTACATTCTCTGTTGA 1141
Query 1085 GCAAGCTTCAACTATGAGACGTAACATTGGAAACTTCAAGATCCCAGCTGGTTCGCTCAC 1144
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||
Sbjct 1142 GCAAGCTTCAACTATGAGACGTAACATTGGAAGCTTTAAGATCCCAGCTGGTTCCCTCAC 1201
Query 1145 TGTGTTTTTCGTTGCGGCTATTCTCATAACTCTAGCTGTCTATGACCGTGCCATAATGCC 1204
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1202 CGTGTTTTTCGTTGCGGCTATTCTCATAACTCTAGCTGTCTACGACCGTGCCATAATGCC 1261
Query 1205 TTTTTGGAAGAAATGGAAAGGAAAACCAGGTTTCTCTAGCCTACAAAGAATAGCTATTGG 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 TTTTTGGAAGAAATGGAAAGGAAAACCAGGTTTCTCTAGCCTACAAAGAATAGCTATTGG 1321
Query 1265 ATTGGTCTTATCAACCGCTGGAATGGCAGCTGCAGCTATAGCT-GAGCAGAAGCGTTTAT 1323
||||||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||||
Sbjct 1322 ATTGGTCTTATCAACCGCTGGAATGGCAGCTGCAGCTCTAG-TAGAGCAAAAGCGTTTAT 1380
Query 1324 CGGTTGTGAAATCTAGTTCACAAAAAACATTGCCAATAAGTGTATTCTTACTTGTTCCAC 1383
| |||| ||||||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 1381 CCGTTGCGAAATCTAGTTCACAAAAAACATTGCCTATAAGTGTGTTTTTACTTGTTCCAC 1440
Query 1384 AATTCTTCTTAGTGGGAGCTGGGGAAGCGTTTATCTACACTGGCCAACTTGATTTCTTCA 1443
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1441 AATTCTTCTTAGTAGGAGCTGGGGAAGCCTTTATCTACACTGGCCAACTTGATTTCTTCA 1500
Query 1444 TTACCCAATCGCCTAAGGGAATGAAAACAATGAGCACTGGCCTTTTCTTGACCACTTTAT 1503
| || ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 1501 TAACACAATCGCCTAAGGGAATGAAAACTATGAGCACTGGACTCTTCTTGACCACTTTAT 1560
Query 1504 CACTAGGTTTCTTTGTCAGCAGTTTCTTGGTCTCAATCGTTAAGAGGGTCACTTCAACTT 1563
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1561 CACTAGGTTTCTTTGTCAGCAGTTTCTTGGTCTCAATCGTCAAGAGGGTCACTTCAACTT 1620
Query 1564 CTACAGATGGAGGATGGCTGGCTGATAACATCAACCACGGCCGACTCGATTACTTTTATT 1623
|||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1621 CTACTGATGTAGGATGGCTGGCTGATAACATTAACCACGGCCGACTCGATTACTTTTATT 1680
Query 1624 GGCTTTTAGTCATTCTCAGTGGAATTAACTTCGTTGTCTATATCATATGTGCCTTGTGGT 1683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 GGCTTTTAGTCATTCTCAGTGGAATTAACTTCGTTGTCTATATCATATGTGCCTTGTGGT 1740
Query 1684 TTAAGCCAACGAAGGGTAAAGACTCAGCAGAGAAGGAAAATGGCAAGGGATTTTCAGTTG 1743
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1741 TTAAGCCAACGAAGGGTAAAGACTCAGTAGAGAAGGAAAATGGCAAGGGATTTTCAGTTG 1800
Query 1744 AAGACTGCTAAATTTTGTTTTGAAATAATTTTCTT 1778
||||||||| |||||||||||| ||||||| ||||
Sbjct 1801 AAGACTGCTGAATTTTGTTTTGCAATAATTGTCTT 1835
> AT2G26692.1 | Symbols: | other RNA | chr2:11350719-11351293
FORWARD LENGTH=480
Length=480
Score = 178 bits (96), Expect = 2e-43
Identities = 102/105 (97%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 23 GGAGAGCAAAGGGAGTTGGACAGTGGCTGATGCCGTAGACTACAAAGGCCGACCTGCCGA 82
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 111 GGAGAGCAAAGGGAGTTGGACAGTGGCTGATGCCGTAGACTACAAAGGACGACCTGCCGA 52
Query 83 CAAATCCAAAACCGGTGGCTGGATCACTGCAGCTCTCATTCTTGG 127
|||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 51 CAAATCCAAAACCGGTGGTTGGATCACTGCCGCTCTCATTCTTGG 7
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87951354840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5