BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932971

Length=1802
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G73060.1 | Symbols: LPA3 | Low  PSII Accumulation 3 | chr1:2...  97.1    5e-19


> AT1G73060.1 | Symbols: LPA3 | Low  PSII Accumulation 3 | chr1:27478970-27481448 
FORWARD LENGTH=1324
Length=1324

 Score = 97.1 bits (52),  Expect = 5e-19
 Identities = 61/65 (94%), Gaps = 2/65 (3%)
 Strand=Plus/Plus

Query  75   AAGACAGTGGCAGTGGCACCATTTGTGTTAAACTACAATGGAGCA-TGTTTTCGACAATA  133
            ||||||||||||||||||||||||||||| |||||||| |||||| | ||||||||||||
Sbjct  847  AAGACAGTGGCAGTGGCACCATTTGTGTTGAACTACAACGGAGCACT-TTTTCGACAATA  905

Query  134  TCCTG  138
            |||||
Sbjct  906  TCCTG  910



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 89156167920


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5