BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932972

Length=835
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G03390.1 | Symbols: SRF3 | STRUBBELIG-receptor family 3 | ch...   174    1e-42


> AT4G03390.1 | Symbols: SRF3 | STRUBBELIG-receptor family 3 | 
chr4:1490465-1495103 REVERSE LENGTH=3250
Length=3250

 Score =  174 bits (94),  Expect = 1e-42
 Identities = 113/122 (93%), Gaps = 2/122 (2%)
 Strand=Plus/Plus

Query  685   TTGATATATCATCTAACAATCTAAGCGGCACATTTG-CTCCTTCAATGGAGAATTTATCA  743
             |||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||||| |
Sbjct  990   TTGATATATCATCTAACAATATAAGCGGCACA-TTGCCTCCTTCTATGGAGAATTTATTA  1048

Query  744   ACTCTTACAACATTACGTGTTCAGAACAACCAGCTCTCACGAAATCTGGACGTTCTTAAA  803
             ||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| ||
Sbjct  1049  ACTCTTACAACATTACGTGTTCAGAACAATCAGCTCTCAGGAACTCTGGACGTTCTTCAA  1108

Query  804   GG  805
             ||
Sbjct  1109  GG  1110


 Score = 91.6 bits (49),  Expect = 1e-17
 Identities = 59/64 (92%), Gaps = 0/64 (0%)
 Strand=Plus/Plus

Query  622  CAGCCAATCAGTTCACCGGAAGCATCCCGGAATCTATAGGAATATTTAGTTTTCTAAATG  681
            |||| |||||||||||||||||||||||||||||| |||||| ||| |||||||| ||||
Sbjct  855  CAGCTAATCAGTTCACCGGAAGCATCCCGGAATCTCTAGGAACATTGAGTTTTCTGAATG  914

Query  682  ACAT  685
            ||||
Sbjct  915  ACAT  918



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40689659070


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5