BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932977

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G27750.1 | Symbols:  | nucleic acid binding | chr1:9657385-9...   148    2e-35


> AT1G27750.1 | Symbols:  | nucleic acid binding | chr1:9657385-9661958 
FORWARD LENGTH=3476
Length=3476

 Score =  148 bits (80),  Expect = 2e-35
 Identities = 100/109 (92%), Gaps = 3/109 (3%)
 Strand=Plus/Plus

Query  132  GAATCTCAGCCTCCG---CCACCGCAATTAGAATCCCAATCCCCTTCTACGGTGGTTAGC  188
            |||||||| ||||||   ||||||||| |||||||||||||||||||||||||||| |||
Sbjct  95   GAATCTCACCCTCCGCCACCACCGCAACTAGAATCCCAATCCCCTTCTACGGTGGTAAGC  154

Query  189  TCGTTCCCAGCTCCGGTGACGCCGTAGCCTCCATCTCAGGAGGAAATTC  237
            |||||||| ||||||||||| |||| |||||||||||||||||||||||
Sbjct  155  TCGTTCCCGGCTCCGGTGACACCGTCGCCTCCATCTCAGGAGGAAATTC  203


 Score = 93.5 bits (50),  Expect = 8e-19
 Identities = 52/53 (98%), Gaps = 0/53 (0%)
 Strand=Plus/Plus

Query  50   CTCTACGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCTTCCAGAGGTT  102
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  CTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCTTCCAGAGGTT  350



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10707030537


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5