BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932978

Length=593
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G27750.1 | Symbols:  | nucleic acid binding | chr1:9657385-9...   451    3e-126
  AT2G39450.1 | Symbols: MTP11, ATMTP11 | Cation efflux family pr...   174    7e-43 


> AT1G27750.1 | Symbols:  | nucleic acid binding | chr1:9657385-9661958 
FORWARD LENGTH=3476
Length=3476

 Score =  451 bits (244),  Expect = 3e-126
 Identities = 368/424 (87%), Gaps = 23/424 (5%)
 Strand=Plus/Plus

Query  1    GAAGCAGGAACAGAGATGAGATGCGAAGAGTGCATGACTGCTATAAGCGTCTCAAATCTT  60
            |||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct  210  GAAGTAGGAACAGAGAAGAGATTCGAAGAGTGCATGACTGCTATAAGCGTCTTAAATCTT  269

Query  61   CTATTGGTCAGAGAGATGGTGGTGGATGCTCTGCGAATCTTGAGCAAGCGTATCGTTCCC  120
             | ||| ||||||||||||||| ||  |||||||||||||||||||||||||||| ||||
Sbjct  270  GTGTTGCTCAGAGAGATGGTGGCGGCCGCTCTGCGAATCTTGAGCAAGCGTATCGCTCCC  329

Query  121  TCATATCCGCTTCCAGAGTTAGTTGCTTATACTTGCAGGCTGTACTAGCGTTAAGCGGCC  180
            |||| |||||||||  ||  ||  |        |      |||||||||||||||| |||
Sbjct  330  TCATCTCCGCTTCC--AG--AG--G--------T------TGTACTAGCGTTAAGC-GCC  368

Query  181  TTGTGGCTGATCTCATTCTTCGGTATGCACTATACTGCCCTACTGCTGTCGGAGATGCAT  240
            |||||||||||||| ||| ||| |||||| | ||||| ||||| ||| | ||||||||| 
Sbjct  369  TTGTGGCTGATCTCGTTCCTCGATATGCATTGTACTGTCCTACGGCTATTGGAGATGCAG  428

Query  241  TGCAAGCTGTTATCGACATGCATAACTTCAGCGTGGAAGCTTTAAAGAGAGGACAAGATA  300
            ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct  429  TGCAAGCTGTTATTGACATGCATAACTTCAGCTTGGAAGCTTTAAAGAGAGGACAAGATG  488

Query  301  CTGATGGTGTTGCTTTTCAAACTGCTAAAGCCTGCATATTTGGTCTGGTTGACCTATGTT  360
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  489  CTGATGGTGTTGCTTTTCAAACTGCTAAAGCCTGCATATTTGGTCTAGTTGACCTATGTT  548

Query  361  CTGCTGCTT-ATTCAAAGACAACATCATCACCAGGGGGTCGTGATATCCGCTCTGCTGTG  419
            ||||||||| || | |||| ||| ||||||||||||| ||| |||||| ||||||| |||
Sbjct  549  CTGCTGCTTTAT-CGAAGAAAACGTCATCACCAGGGGCTCGAGATATCTGCTCTGCCGTG  607

Query  420  TTCA  423
            ||||
Sbjct  608  TTCA  611


> AT2G39450.1 | Symbols: MTP11, ATMTP11 | Cation efflux family 
protein | chr2:16471632-16473818 REVERSE LENGTH=1380
Length=1380

 Score =  174 bits (94),  Expect = 7e-43
 Identities = 102/106 (96%), Gaps = 0/106 (0%)
 Strand=Plus/Plus

Query  459  GGTCCGGAAGACAATGTGGCAGATTATTACCAGCAACAGGTAGAGATGCTTGAGGGCTTT  518
            ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct  249  GGTCCGGAAGACAATGTGGCAGATTATTACCAGCAGCAAGTAGAGATGCTTGAGGGCTTT  308

Query  519  ACTGAAATGGAAGAACTTGCAGAACGTGGCTTTGTTCCTGGTATGT  564
            ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct  309  ACTGAAATGGATGAACTTGCAGAACGTGGCTTTGTTCCTGGAATGT  354



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28532995496


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5