BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932988
Length=1198
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26760.1 | Symbols: CYCB1;4 | Cyclin B1;4 | chr2:11401329-11... 1703 0.0
> AT2G26760.1 | Symbols: CYCB1;4 | Cyclin B1;4 | chr2:11401329-11403427
FORWARD LENGTH=1608
Length=1608
Score = 1703 bits (922), Expect = 0.0
Identities = 1117/1209 (92%), Gaps = 21/1209 (2%)
Strand=Plus/Plus
Query 4 AACAACAAGGTTCAG--A-TATGGCGTCGTCTAGAGTCTCTGATCTTCCTCATCAACGTG 60
||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||
Sbjct 203 AACAACAAGGTTCAGATATTATGGCGTCTTCTAGAGTCTCTGATCTTCCTCATCAACGTG 262
Query 61 GAATCGCAGGTGAAATCAAACCGAGGAATGTTGCGGGACATGGAAGACAAAACCGAAAAG 120
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||
Sbjct 263 GAATCGCAGGTGAAATCAAACCGAAGAATGTTGCAGGACATGGAAGACAAAACCGGAAAG 322
Query 121 TTCTTGGAGACATTGGTAATCTCGTCACTGGCCGTGATGTTGTAACCA-GAAAGGATATT 179
|||||||||||||||||||||| |||||||| |||||||||| || || |||||||| ||
Sbjct 323 TTCTTGGAGACATTGGTAATCTTGTCACTGGTCGTGATGTTGCAA-CAGGAAAGGATGTT 381
Query 180 GCGAAGAAGGTG----AA--AC--C-GCAGACAAAAGCCGAGGTTATAGTCATTAGCCCT 230
|||||||||| | || || | |||||||||||| |||||||| ||||||||||||
Sbjct 382 GCGAAGAAGGCGAAACAACCACAGCAGCAGACAAAAGCTGAGGTTATTGTCATTAGCCCT 441
Query 231 GACGAAAACGAGAAAAGCTGTAAACCACATTTCAGCAGAAGAACTCATATTCGAGGAACC 290
|| ||||||||| ||| || ||||||||||| ||||||||||||||||| ||||||||
Sbjct 442 GATGAAAACGAG-AAA--TGCAAACCACATTTTAGCAGAAGAACTCATATAAGAGGAACC 498
Query 291 AAAACTTTTACCGCAACCTTAAGAGCCCGAAGCAAGGCTGCGAATGGAATGAAGGATGCT 350
|| ||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||
Sbjct 499 AAGACTTTTACCGCAACCTTAAGAGCTCGAAGCAAGGCTGCGAGTGGACTGAAGGATGCT 558
Query 351 GTGATTGACATTGATGCTGCCGATGCTAACAACGAACTGGCTGCTGTGGAATATGTAGAT 410
||||| ||||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct 559 GTGATCGACATTGATGCTGTGGATGCTAACAATGAACTGGCTGCTGTGGAATACGTAGAG 618
Query 411 GACATCTTCAAGTTTTATAGGACTGTAGAAGAGGAAGGAGGAATCAAAGACTATATTGGA 470
|||||||||||||||||||||||||| |||||||||||||| || ||||||||||| |||
Sbjct 619 GACATCTTCAAGTTTTATAGGACTGTGGAAGAGGAAGGAGGGATTAAAGACTATATAGGA 678
Query 471 TCACAGCCTGAGATAAACGAGAAGATGAGATCGATTCTGATCGATTGGCTTGTAGATGTT 530
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 679 TCACAACCTGAGATAAACGAGAAGATGAGATCGATTCTGATAGATTGGCTTGTAGATGTT 738
Query 531 CACAGGAAGTTTGAGTTGATGCCAGAGACGCTTTACCTCACCATTAACCTCGTTGATCGG 590
|||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct 739 CACAGGAAGTTTGAGTTGATGCCAGAGACGCTATACTTAACCATTAACCTCGTTGATCGG 798
Query 591 TTTCTATCTTTGGCAATGGTTCCTAGAAGAGAGCTTCAACTGTTGGGACTAGGCGCTATG 650
|||||||||||| ||||||||| ||||||||||||||| |||||||||||||| ||||||
Sbjct 799 TTTCTATCTTTGACAATGGTTCATAGAAGAGAGCTTCAGCTGTTGGGACTAGGTGCTATG 858
Query 651 CTTATAGCTTGCAAGTATGAAGATATTTGGGCTCCTGAGGTTAATGATTTCGTCTGTATT 710
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 859 CTTATAGCTTGCAAGTATGAGGAGATTTGGGCTCCTGAGGTTAATGATTTCGTCTGTATT 918
Query 711 TCGGACAATGCATATAGCAGGAAACAGGTCTTGGCTATGGAGAAATCAATCTTAGGACAA 770
||||||||||| |||| |||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 919 TCGGACAATGCCTATAACAGGAAACAGGTTTTGGCTATGGAGAAATCGATCTTAGGACAA 978
Query 771 GTCGAATGGTACATCACAGTTCCAACGCCTTATGTGTTCATTGTGCGGTATGTTAAAGCT 830
|| |||||||||||||| |||||||| |||||||||||| ||| ||| || |||||||||
Sbjct 979 GTTGAATGGTACATCACTGTTCCAACTCCTTATGTGTTCCTTGCGCGATACGTTAAAGCT 1038
Query 831 TCGGTTCCATGTGACATTGAGATGGAGAAACTGGTGTTTTATC-TAGCTGAGCTGGGACT 889
||||||||||||| ||||||||||||| ||||||| || | | ||||||||||||||
Sbjct 1039 GCGGTTCCATGTGATGCTGAGATGGAGAAATTGGTGTTCTA-CTTGGCTGAGCTGGGACT 1097
Query 890 TATGCAGTATCCCATAGTTGTCTTAAACCGTCCATCGATGCTGGCTGCATCATCGGTTTA 949
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1098 TATGCAGTATCCTATAGTTGTCTTAAACCGTCCATCGATGCTGGCTGCATCAGCGGTTTA 1157
Query 950 TGCTGCGCGTCAAATCCTTAAGAAGACGCCATTTTGGACTGAGACTTTGAAACATCACAC 1009
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1158 TGCTGCGCGTCAGATCCTTAAGAAGACGCCATTTTGGACTGAGACCTTGAAACATCACAC 1217
Query 1010 TGGCTACTTGGAAGATGAGATCATGGAACATGCGAAAATGCTGATCAAGTTAAGGGACTC 1069
|||||||| |||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1218 TGGCTACTCGGAAGATGAGATTATGGAGCATGCGAAAATGCTGATGAAGTTAAGGGACTC 1277
Query 1070 AGCTTCAGAGAGTACGCTAAGT-GCAGTGTTTAAGAAATACTCTGTCTCAGAAAACGCTG 1128
||||||||||||| ||||| | |||||||| ||||||||||||||||||||||||||||
Sbjct 1278 GGCTTCAGAGAGTAAGCTAA-TAGCAGTGTTCAAGAAATACTCTGTCTCAGAAAACGCTG 1336
Query 1129 AAGTTGCTCTTCTTCCTTCGCTTGACGACTTATCTGTTTCTTGTGCATGAAGAAACAAAA 1188
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1337 AAGTTGCTCTTCTTCCTTCGCTTGACGACTTCTCTGTTTCTTGTGCATGAAGAAACAAAA 1396
Query 1189 CCCTAGTCT 1197
|||||||||
Sbjct 1397 CCCTAGTCT 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58835038740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5