BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932989

Length=701
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G26760.1 | Symbols: CYCB1;4 | Cyclin B1;4 | chr2:11401329-11...   383    1e-105


> AT2G26760.1 | Symbols: CYCB1;4 | Cyclin B1;4 | chr2:11401329-11403427 
FORWARD LENGTH=1608
Length=1608

 Score =  383 bits (207),  Expect = 1e-105
 Identities = 265/293 (90%), Gaps = 4/293 (1%)
 Strand=Plus/Plus

Query  370   ACAGGAAACAGGTCTTGGCTATGGAGAAATCGATCTTAGGACAAGTCGAATGGTATATCA  429
             ||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct  935   ACAGGAAACAGGTTTTGGCTATGGAGAAATCGATCTTAGGACAAGTTGAATGGTACATCA  994

Query  430   CGGTTCCAACTCCTTATGTGTGCCTTGCGCGCCATGTCAAAGCTTCGGTTCCATGTGACA  489
             | ||||||||||||||||||| |||||||||  | || |||||| |||||||||||||  
Sbjct  995   CTGTTCCAACTCCTTATGTGTTCCTTGCGCGATACGTTAAAGCTGCGGTTCCATGTGATG  1054

Query  490   TTGAGATGGAGAAACTGGTGTTTTATC-TAGCCGAGCTAGGACTTATGCAGTATCCTATA  548
              ||||||||||||| ||||||| || | | || ||||| |||||||||||||||||||||
Sbjct  1055  CTGAGATGGAGAAATTGGTGTTCTA-CTTGGCTGAGCTGGGACTTATGCAGTATCCTATA  1113

Query  549   GTTGTCTTAAACCGTCCATCGAAT-CTGGCTACATCAGCTGTTTATGTTGCGCGTCAAAT  607
             |||||||||||||||||||||| | |||||| ||||||| ||||||| ||||||||| ||
Sbjct  1114  GTTGTCTTAAACCGTCCATCGA-TGCTGGCTGCATCAGCGGTTTATGCTGCGCGTCAGAT  1172

Query  608   CCTTAAGAAGACGCCATTTTGGACTGAGACTTTGAAACATCACATTGGCTACT  660
             |||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct  1173  CCTTAAGAAGACGCCATTTTGGACTGAGACCTTGAAACATCACACTGGCTACT  1225


 Score =  279 bits (151),  Expect = 2e-74
 Identities = 185/202 (92%), Gaps = 0/202 (0%)
 Strand=Plus/Plus

Query  167  CAAGTACTATAGGACTGTAGAAGAGGAAGGAGGAATCAAAGACTATATTGGATCACAACC  226
            |||||  ||||||||||| |||||||||||||| || ||||||||||| |||||||||||
Sbjct  627  CAAGTTTTATAGGACTGTGGAAGAGGAAGGAGGGATTAAAGACTATATAGGATCACAACC  686

Query  227  TGAGATAAATGAGAAGATGAGATCGATTCTGATCGATTTGCTTGTAGATGTTCACAGGAA  286
            ||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct  687  TGAGATAAACGAGAAGATGAGATCGATTCTGATAGATTGGCTTGTAGATGTTCACAGGAA  746

Query  287  GTTTGAGTTAATGCCAGAGACACTTTACGTCACCATTAACCTCGTTGATCGGTTTCTATC  346
            ||||||||| ||||||||||| || ||| | |||||||||||||||||||||||||||||
Sbjct  747  GTTTGAGTTGATGCCAGAGACGCTATACTTAACCATTAACCTCGTTGATCGGTTTCTATC  806

Query  347  TTTGGCAATGGTTCCTAGGAGA  368
            |||| ||||||||| ||| |||
Sbjct  807  TTTGACAATGGTTCATAGAAGA  828



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33958283372


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5