BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932992
Length=2438
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26790.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3352 0.0
AT1G13800.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 75.0 3e-12
> AT2G26790.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr2:11425270-11427669 REVERSE LENGTH=2400
Length=2400
Score = 3352 bits (1815), Expect = 0.0
Identities = 2219/2413 (92%), Gaps = 32/2413 (1%)
Strand=Plus/Plus
Query 21 ATGCGGTTTTCTCCAACCTTCTTCTTACTCTCACAATTGCGATTGACT---CGAAGAGCA 77
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGCGGTTTTCTCCAACCTTCTTCTTACTCTCACAATTGCGATTGACTCGACGAAGAGCA 60
Query 78 GCCACCTCTTCGCGTTTCTTCGCCGTCTCTGCTCTCAACAACCCTAACAATCTCTCAGAT 137
||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||
Sbjct 61 GCCACCTCTTCGCGTTTCTACGCCGTCTCTGCTCTCAACAATCCTAATAATCTCTCAGAC 120
Query 138 TCTGA--A-CAACAGGTGAATCATCTTAACCTCTCTAAGCTTACTCAATATGGTCTTCAG 194
||||| | || ||||||||||||||||| ||||| |||||||||||| |||||||||||
Sbjct 121 TCTGAGCAGCAGCAGGTGAATCATCTTAATCTCTCCAAGCTTACTCAACATGGTCTTCAG 180
Query 195 CGACTCCTGAATAGTACCAGAGATGACCCAAATCAGGCTTTGTCGTTTTTACGACAGCTT 254
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 181 CGACTCCTGAATAGTACCAGAGATGACCCAAATCTCGCTTTGTCGTTTTTGCGACAGCTT 240
Query 255 AAAGAACATGATGTTTCTCCTAATGTTAATGCTTACGCAACTCTTGTCAGAATTCTTACT 314
|| ||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 AAGGAACATGGTGTGTCCCCTAATGTCAATGCTTACGCAACTCTTGTCAGAATTCTTACT 300
Query 315 AGTTGGGGTTTGGACAGGAAGTTAGATTCTGTGTTAGTTGAACTAATTAAGAACGAGGAG 374
| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 ACTTGGGGTTTGGACATCAAGTTAGATTCTGTTTTAGTTGAACTAATTAAGAACGAGGAG 360
Query 375 CGTGGTTTCAGTGTAATGGATTTGATTGAAGTTATTGGAGAAGAAGAAGCTGAGGAAGAT 434
|||||||||| ||||||||||||||||||||||||| | | ||| ||||||||||| |
Sbjct 361 CGTGGTTTCACTGTAATGGATTTGATTGAAGTTATT-G-G-TGAACAAGCTGAGGAAAAG 417
Query 435 CAACGGTC-TTTGGTTTTGATTCGAGTCTCTGGTGCTTTGGTTAAAGCTTATGTTGGTCT 493
|||| || ||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 418 AAACGATCATTT-GTTTTGATTCGAGTCTCTGGTGCTTTGGTTAAAGCTTATGTTAGTCT 476
Query 494 CGGGATGTTTGACGAGGCGATCGATGTTTTGTTTCAGAGTAAACGGTTGGATTGTGTTCT 553
|| ||||| ||||| || | ||||||||||||||||||||||||||||||||||||| |
Sbjct 477 TGGTATGTTCGACGAAGCTACCGATGTTTTGTTTCAGAGTAAACGGTTGGATTGTGTTGT 536
Query 554 CGATATTAAGGCGTGTAATTTCTTGATGAATCGTTTGATTGAGTTTGGGAAAATTAGTAT 613
|||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| ||||
Sbjct 537 CGATATAAAGGCGTGTAATTTCTTGATGAATCGTATGACTGAGTTTGGGAAAATTGGTAT 596
Query 614 GGTGGTGGCTTTGTTTAAGCAACTTAAGCAGTTGGGGTTGTGTGCAAATGAGTACACGTA 673
| || || ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 597 GCTGATGACTTTGTTTAAGCAACTTAAGCAGTTAGGGTTGTGTGCAAATGAGTACACGTA 656
Query 674 TGCGATTGTGGTTAAGGCATTGTGTAGGAAAGGCGATTTAGAAGGAGCAGCTATGTTGCT 733
||| |||||||||||||| |||||||||||||| ||||||||| |||||||||||||||
Sbjct 657 TGCTATTGTGGTTAAGGCGTTGTGTAGGAAAGGTAATTTAGAAGAAGCAGCTATGTTGCT 716
Query 734 TCTGGAAAGTCCGAGCGTGTTTTCTTATAAGACTTTCATTGACGGACTTTGTGTCAATGG 793
| | |||| | ||| |||||| |||||||||||||||| ||||||||||||| | |||
Sbjct 717 TATCGAAAATGAGAGTGTGTTTGGTTATAAGACTTTCATTAACGGACTTTGTGTTACTGG 776
Query 794 AGAGACAGAGAAAGCTGTTGTTTTGATAGAAGAAATGATAGATATG-AATGTTCTGGCTG 852
|||||||||||||||||||| |||||| ||| ||||||||| | ||| ||||||||
Sbjct 777 AGAGACAGAGAAAGCTGTTGCTTTGATCTTAGAGCTGATAGATAGGAAAT-ATCTGGCTG 835
Query 853 GTGATGACCTTAGAACTGTATTTGGTATGGTGGTTCGCGGTTTTTGTAATGAGATGAAAA 912
|||||||||| ||| |||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 836 GTGATGACCTCAGAGCTGTGCTTGGTATGGTGGTTCGCGGTTTCTGTAATGAGATGAAAA 895
Query 913 TGGAAGCTGCGGAAAGTGTTATTCTTGAAATGGAGAAAATTGGGTTTGGTCTTGATG-TT 971
|| ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||| ||
Sbjct 896 TGAAAGCTGCTGAAAGTGTTATTATTGAAATGGAGGAAATTGGGTTTGGTCTTGATGTTT 955
Query 972 AGTGCTTGCTCAGCGATAATTGATCGATATTGCAAGAGTATGAATTTACCTGAAGCATTG 1031
| |||||| | |||| | |||||||||||||| |||| |||||||||||||||||||||
Sbjct 956 A-TGCTTGTTTAGCGGTGATTGATCGATATTGTAAGAACATGAATTTACCTGAAGCATTG 1014
Query 1032 GGGTTTTTAGATAAAATGTTGGGAAAAGGACTGAAAGTAAATTGTGTGATTGTTAGTTCG 1091
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1015 GGGTTTTTAGATAAAATGTTGGGAAAAGGATTGAAAGTAAATTGTGTGATTGTTAGTTTG 1074
Query 1092 ATTCTTCAGTGCTATTGTAAGATGGACATGTGTTTGGAAGCGTTAGAGAAGTTTAAAGAA 1151
||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1075 ATTCTTCAGTGTTATTGTAAGATGGACATGTGTTTGGAAGCATTAGAAAAGTTTAAAGAA 1134
Query 1152 TTTAGAGACATGAATATTTTCCTTGACAGAGTTTGTTACAATGTCGCATTTGATGCGTTG 1211
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1135 TTTAGAGACATGAACATTTTCCTTGACAGAGTTTGTTACAATGTCGCGTTTGATGCGTTG 1194
Query 1212 AGCAAGCTTGGGAGAGTGGAAGAAGCTATTGAGCTGCTCCAAGAAATGAAGGATAAAGGA 1271
|||||||| |||||||||||||||||| |||||||||| |||||||||||||||| ||||
Sbjct 1195 AGCAAGCTGGGGAGAGTGGAAGAAGCTTTTGAGCTGCTACAAGAAATGAAGGATAGAGGA 1254
Query 1272 ATTGTTCCTGATGTCATCAACTACACAACTCTGATAGATGGCTATTGCCTTAAAGGTAAA 1331
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1255 ATTGTTCCTGATGTCATCAACTACACAACTCTGATAGATGGCTATTGCCTTCAAGGTAAA 1314
Query 1332 GTTGTTGATGCCCTTGATTTGATTGATGAAATGATAGGAAATGGTACCTCTCCTGATTTA 1391
|||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct 1315 GTTGTTGATGCCCTTGATTTGATTGACGAAATGATAGGAAATGGTATGTCGCCTGATTTA 1374
Query 1392 ATTACATACAATGTGCTTGTCAGTGGATTGGCCAGGAATGGTCATGAGGAAGCGGTACTT 1451
|| |||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1375 ATCACATACAACGTGCTTGTCAGTGGATTGGCCAGAAATGGTCATGAGGAAGAGGTACTT 1434
Query 1452 GAGATTTATGAAAGAATGAAAGCTGAGGGTCTAAAGCCTAATGCTGTCACTGACAATGTG 1511
|| ||||||||||||||||||||||| |||| |||||| |||||||||||| ||| ||||
Sbjct 1435 GAAATTTATGAAAGAATGAAAGCTGAAGGTCCAAAGCCCAATGCTGTCACTAACAGTGTG 1494
Query 1512 ATCATTGAAGGCTTGTGTTTTGCACGTAAAGTAAAAGAAGCCGAAGATTTCTTCA-TGAG 1570
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1495 ATCATTGAAGGCTTGTGTTTTGCACGTAAAGTAAAAGAAGCCGAAGATTTCTTCAGT-AG 1553
Query 1571 TCTAGAGCAAAAATGTCCAGAAAATAAAGCCAGTTTGGTGAAAGGTTACTGTGAATCTGG 1630
| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1554 TTTAGAGCAAAAATGTCCAGAAAATAAAGCCAGTTTTGTGAAAGGTTACTGTGAAGCTGG 1613
Query 1631 CCTTTCTAAAAAGGCCTTTAAA-CTATTCGTTACACTGGAATACCCTCTGCGCAAGAGTG 1689
||||||||||||||| | |||| | |||||||| | ||||||||||||||||||| ||||
Sbjct 1614 CCTTTCTAAAAAGGCATATAAAGC-ATTCGTTAGATTGGAATACCCTCTGCGCAAAAGTG 1672
Query 1690 TGTACATCAAATTATTCTTTAGTCTATGCATTGAGGGTTGTCTCGACAAAGCTCAT-ACC 1748
||||||||||| ||||||||||||| ||||| ||||||| |||||| ||||||||| ||
Sbjct 1673 TGTACATCAAACTATTCTTTAGTCTCTGCATCGAGGGTTATCTCGAGAAAGCTCATGAC- 1731
Query 1749 GTACTGAAGAGAATGTGGGCTTATCGAGTTGAACCTGGGAGGAGCATGTGTGGCAAAATG 1808
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 GTACTGAAGAAAATGTCAGCTTATCGAGTTGAACCTGGGAGGAGCATGTGTGGCAAAATG 1791
Query 1809 ATTGGGGCGTTGTGTAGGTTAAATAGTGCG-GTAGACGCCCA-GCAGTTATTTGACACAA 1866
|||||||| || |||| |||||||| || | | ||| ||||| | |||||||||||| |
Sbjct 1792 ATTGGGGCATTTTGTAAGTTAAATAATGTGAG-AGAGGCCCAAGT-GTTATTTGACACGA 1849
Query 1867 TGGTTGAGAGAGGAGTCATCCCTGATCTCTTTACTTATACAATCATGATTCACACCTACT 1926
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1850 TGGTTGAGAGAGGACTCATCCCTGATCTGTTTACTTATACAATCATGATTCACACCTACT 1909
Query 1927 GTAGGCTAAATGAGTTACAGAAAGCTGAGTCTCTTTTTGAGGACATGAAGCAGAGAGGAA 1986
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1910 GTAGGCTAAATGAGTTACAGAAAGCCGAGTCTCTTTTTGAGGACATGAAGCAGAGAGGAA 1969
Query 1987 TAAAACCTGATGTGGTAACATACACAGTTTTACTTGATAGGTACCTGAAGTTGGATCCAG 2046
| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1970 TCAAACCTGATGTGGTAACATACACAGTTTTGCTTGATAGGTATCTGAAGTTGGATCCAG 2029
Query 2047 AGCATCATGAAACAGGTTCTGTTCAAGGAGAAGTGGGAAAAAGAAA---TTCAGAACTTT 2103
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 2030 AGCATCATGAAACATGTTCTGTTCAAGGAGAAGTGGGAAAAAGAAAAGCTTCAGAAGTTT 2089
Query 2104 TGAGAGAATTCTCAGCCT-CTGGTATTGGATTAGACGTTGTAAGCTATACAGTTTTGATA 2162
|||||||||| ||||| | ||||||||||| |||| |||||| |||||||||||||||||
Sbjct 2090 TGAGAGAATTTTCAGC-TGCTGGTATTGGACTAGATGTTGTATGCTATACAGTTTTGATA 2148
Query 2163 GATCGTCAGTGCAAGATGGACAAGCTAGAACAAGCTGCTGAACTTTTTGATCGAATGATA 2222
|||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||
Sbjct 2149 GATCGTCAGTGCAAGATGAACAATTTAGAACAAGCCGCTGAACTTTTTGATCGAATGATA 2208
Query 2223 GACAGCGGGCTGGAGCCTGATATAGTGGCTTACACAGCTCTAATATCTAGTTATTTTCGG 2282
||||||||| ||||||||||||| ||||| |||||| |||||||||| |||||||||||
Sbjct 2209 GACAGCGGGTTGGAGCCTGATATGGTGGCATACACAACTCTAATATCCAGTTATTTTCGC 2268
Query 2283 AAAGGATACATAGATAAGGCAGTCACACTTGTTACCGAACTGTCAAAAAAGTATAATATA 2342
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2269 AAAGGATACATAGACATGGCAGTCACACTTGTTACCGAACTGTCAAAAAAGTATAATATA 2328
Query 2343 CCGACTGAACA-TTTTGAGGCTGCAGTTAAGCGTGCTGCTTTGAAGGCGAAGAGATTTCA 2401
|||| |||| | |||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 2329 CCGAGTGAA-AGTTTTGAGGCTGCAGTTAAAAGTGCTGCTTTGAAGGCAAAGAGATTTCA 2387
Query 2402 AAATGGGGAATGA 2414
| |||||||||||
Sbjct 2388 ATATGGGGAATGA 2400
> AT1G13800.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:4731056-4733707 REVERSE LENGTH=2652
Length=2652
Score = 75.0 bits (40), Expect = 3e-12
Identities = 57/65 (88%), Gaps = 2/65 (3%)
Strand=Plus/Plus
Query 1957 CTCTTTTTGAGGACATGAAGCA-GAGAGGAATAAAACCTGATGTGGTAACATACACAGTT 2015
|||||||| | ||||||||| | ||||| ||| |||||||||||||||||||||||||
Sbjct 2156 CTCTTTTTAAAGACATGAAG-AGGAGAGAAATCGTACCTGATGTGGTAACATACACAGTT 2214
Query 2016 TTACT 2020
|||||
Sbjct 2215 TTACT 2219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121083714540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5