BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933001
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26830.1 | Symbols: emb1187 | Protein kinase superfamily pro... 1847 0.0
> AT2G26830.1 | Symbols: emb1187 | Protein kinase superfamily protein
| chr2:11443561-11447171 FORWARD LENGTH=1376
Length=1376
Score = 1847 bits (1000), Expect = 0.0
Identities = 1103/1153 (96%), Gaps = 6/1153 (1%)
Strand=Plus/Plus
Query 18 AAAATGGGAGCAGCGAAGAATATCTGGGCATTAGCCAACGCCGAAGATGAAGCTAACGAC 77
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 36 AAAATGGGAGCAGCGAAGAATATCTGGGCATTAGCCAACGCCGAAGATGCAGCTAACGAC 95
Query 78 GCCGAACAAATTCCTTATTCTTCGTTCGTCGTCGATACGTCTTTGCCTCTTCCTCTCATG 137
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 96 GCCGAACAAATCCCTTATTCTTCGTTCGTCGTCGACACGTCTTTGCCTCTTCCTCTCATG 155
Query 138 ATTCCTCGTATCATAGAGTTATGTAAAGATCTGTTCAAGAATTGGCGAGATCTTGATGAT 197
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 156 ATTCCTCGTATCATAGAGTTATGTAAAGATCTGTTCAAGAATTGGGGAGAGCTTGATGAT 215
Query 198 TCACTCTTCTCTGTTGAGAGAGTATCTGGAGGCATCACAAATCTATTGCTCAAGGTTTCT 257
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 216 TCACTCTTCTCTGTTGAGAGAGTATCTGGAGGCATTACAAATCTTTTGCTGAAGGTTTCT 275
Query 258 GTGAAGGAGGACACTGATAAACAAGTGTCTGTTACAGTGCGACTGTATGGGCCTAACACG 317
||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 276 GTGAAAGAGGACACTAATAAAGAAGTGTCTGTTACAGTGAGACTGTATGGGCCTAACACT 335
Query 318 GAGTATGTTATTAACCGGGAGAGAGAGATACTGGCTATCAAGTATCTCTCGGCTGCCGGA 377
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 336 GAGTATGTTATTAACCGGGAGAGAGAGATTCTGGCTATCAAGTATCTCTCGGCTGCCGGA 395
Query 378 TTTGGTGCCAAGTTGCTTGGTGGATTTGGAAATGGCATGGTGCAATCATTCATCTATGCA 437
||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||
Sbjct 396 TTTGGTGCCAAGTTGCTTGGTGGTTTTGGAAATGGCATGGTGCAATCGTTCATCAATGCA 455
Query 438 AGAACCTTAGAGCCATCAGACATGAGAGAGCCAAAGATTGCTGCGGAAATTGCCAAAGAA 497
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 456 AGAACCTTAGAGCCATCAGACATGAGAGAGCCAAAGATTGCTGCACAAATTGCCAGAGAA 515
Query 498 CTTGGAAAGTTTCATAAAGTGGACATACCAGGTTCCAAGGAACCTCAGCTGTGGGTTGAT 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 CTTGGAAAGTTTCATAAAGTGGACATACCAGGTTCCAAGGAACCTCAGCTGTGGGTTGAT 575
Query 558 ATCTTCAAATTCTATGAAAAAGCATCTACTCTTAGGTTTGAAGAGCCTGACAAGCAGAAG 617
||||| || ||||||||||||||||||||||||| ||||||||| ||||| |||||||||
Sbjct 576 ATCTTGAAGTTCTATGAAAAAGCATCTACTCTTACGTTTGAAGAACCTGATAAGCAGAAG 635
Query 618 CTCTTTGAGACAATTTCGTTTGAAGAACTGCATAAAGAAATTATTGAGCTCAGGGAATTC 677
||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 636 CTCTTTGAGACTATTTCGTTTGAAGAACTCCACAAAGAAATTATTGAGCTAAGGGAATTC 695
Query 678 ACAGGCTTACTTAACGCACCTGTGGTGTTTGCTCATAACGATTTACTATCAGGAAACCTC 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 696 ACAGGCTTACTTAACGCACCTGTGGTGTTTGCTCATAACGATTTACTATCAGGAAACTTC 755
Query 738 ATGCTGAATGATGAAGAAGAGAAACTATACTTGATTGATTTCGAGTATGGATCATACAAC 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 ATGCTGAATGATGAAGAAGAGAAACTATACTTGATTGATTTCGAGTATGGATCATACAAC 815
Query 798 TATAGAGGCTTCGACATCGGAAATCACTTCAATGAATATGCAGGATATGACTGTGATTAC 857
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 816 TATAGAGGCTTTGACATCGGAAATCACTTCAATGAATATGCAGGATACGACTGTGATTAC 875
Query 858 AGCATGTACCCAAGTAAAGAAGAACAATATCATTTCATCAAGCATTACTTGCAGCCAGAC 917
||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 876 AGCCTGTACCCAAGTAAAGAGGAACAATATCATTTCATCAAGCATTACTTACAGCCAGAC 935
Query 918 AAACCAGATGAGGTCAGTAAGGCTGAAGTAGAATCAGTCTTCGTAGAGACAGATGCGTAT 977
|||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 936 AAACCAGACGAGGTCAGTATCGCTGAAGTAGAATCAGTCTTTGTAGAGACAGATGCGTAT 995
Query 978 AAATTAGCATCTCATTTGTACTGGGCAATATGGGCTATCATCCAGGCAAGGATGTCTCCC 1037
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 996 AAATTAGCATCTCATTTGTACTGGGCAATATGGGCGATCATCCAGGCAAGGATGTCTCCC 1055
Query 1038 ATTGAGTTTGAATATTTGGGTTACTTCTTTTTGCGGTACAATGAATACAAGAAGCAGAAG 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 ATTGAGTTTGAATATTTGGGTTACTTCTTTTTGCGGTACAATGAATACAAGAAGCAGAAG 1115
Query 1098 CCACTTACCTTTTCACTTGTTACATCTCACCTGTCTGCATCTG-TGTAGCCTTTGA---- 1152
|||||||| ||||||||||||||||||||||| || ||||| | |||||||||||
Sbjct 1116 CCACTTACTTTTTCACTTGTTACATCTCACCTCTCAGCATC-GCTGTAGCCTTTGGTTGG 1174
Query 1153 CCAAAATGGTTAA 1165
|||||||||||||
Sbjct 1175 CCAAAATGGTTAA 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57178420755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5