BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933004
Length=1156
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26850.1 | Symbols: | F-box family protein | chr2:11449269-... 1679 0.0
AT2G32560.1 | Symbols: | F-box family protein | chr2:13824794-... 1275 0.0
> AT2G26850.1 | Symbols: | F-box family protein | chr2:11449269-11451239
REVERSE LENGTH=1566
Length=1566
Score = 1679 bits (909), Expect = 0.0
Identities = 1066/1143 (93%), Gaps = 6/1143 (1%)
Strand=Plus/Plus
Query 1 ACAAAAATAGTACTTTCTAAATGCTTCTCTACTTACTCATCACTTGTCTCTCTTTTTTCT 60
||| ||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 331 ACACAAATAGTACCTTCTAAATGCTTCTATACTTGCTCATCACTTGTCTCTCTTTCTTCT 390
Query 61 TCTTTGCCAAATCTTTACCCCTTCCTCCATGGGTATCTAAAACCAAAACTTTGCACTCCT 120
||||| ||||||||||| || |||||| ||||| |||||||||||||| ||||| |||||
Sbjct 391 TCTTTTCCAAATCTTTATCCTTTCCTCAATGGGCATCTAAAACCAAAAATTTGCTCTCCT 450
Query 121 TCTACTTCTCCAAGAACTTT-TTTACGAACAGTCTACACCCA-ACCACACCCGATCTAGC 178
|||||||||||||| | ||| ||||| ||||||||||| ||| | |||||||||||||||
Sbjct 451 TCTACTTCTCCAAGTA-TTTGTTTACAAACAGTCTACA-CCAGATCACACCCGATCTAGC 508
Query 179 CTCTCCGGTGCTCGGCCAAATGTCGATACTTGACCTCCCTGACCTTCCTCTCGATTGCAT 238
||||||||||||||| ||||||| || |||||||||||||||||||| ||||| |||||
Sbjct 509 CTCTCCGGTGCTCGGAAAAATGTCAATTCTTGACCTCCCTGACCTTCCACTCGACTGCAT 568
Query 239 TCTTG-ACAATCTTTCACCCTCTGGACTATGTAGCATGGCTAGGGTCTGTAGCTCGTTAA 297
||||| || |||| ||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 569 TCTTGAAC-TTCTTCCACCCTCTGAACTATGTACCATGGCTAGGGTCTGTAGCTCGTTAA 627
Query 298 GAGAGAGATGTGTAAGTGATCATCTGTGGGAGAAACACTTGAAGACAAAATGGGGAAAAA 357
||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||
Sbjct 628 GAGAGAGATGTGTAAGTGATCATTTATGGGAGAAACACTTGAAGACTAAATGGGGAAAAA 687
Query 358 TCCTTGGACCTTCTGCTCACAAAGAGTGGCAATGCTATCTCTCTTCTCCATATCATCTTG 417
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 688 TCCTTGGACCTTCTGCTCACAAAGAATGGCAATGCTATCTATCTTCTCCATATCATCTCG 747
Query 418 ATTCTCCTCATCACCAAACTAGTCATCATGGATTGACCAAAATCATATCTCTTATTCGAT 477
|||||||||||||| |||||||||||| ||| ||| ||||||||||||||||||| ||||
Sbjct 748 ATTCTCCTCATCACAAAACTAGTCATCTTGGTTTGGCCAAAATCATATCTCTTATGCGAT 807
Query 478 CTCTTTCATCGATTTTAGGAGATGATAATCATAGAAGGAGATATCCATCTTCTATTCCTC 537
| |||||||| ||||| |||||||| ||||||| ||||||||||||||||| || ||||
Sbjct 808 CGCTTTCATCCATTTTTCGAGATGATGATCATAGGAGGAGATATCCATCTTCAATCCCTC 867
Query 538 TTGATTCTACCATGAGCTTCTACCTCTCCCTTGAAACAGGTCGTTTTTGGTTCCCAGCTC 597
|||| |||||||||| ||||||||| ||||| ||||||||||| |||||||| |||||||
Sbjct 868 TTGACTCTACCATGAACTTCTACCTATCCCTCGAAACAGGTCGCTTTTGGTTTCCAGCTC 927
Query 598 AAGTTTACAACCGTGAGAATGGACATGTAGGGTTCATGTTGTCATGCTATGATGCTGAGC 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 AAGTTTACAACCGTGAGAATGGACATGTAGGGTTCATGTTGTCATGCTATGATGCTGAGC 987
Query 658 TCAGCTATGACACCCACACTAATACTTTTCAAGCTAGGTATCCACCACATGGTAGAAGAG 717
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 988 TCAGCTATGACACTGACACTAATACTTTTCAAGCTAGGTATCCACCACATGGTAAAAGAG 1047
Query 718 CAATTGCGATTGAAAAGGATGTGACATGGGAAAGGATAAGAGCAGCTCCCATTGATGCAT 777
|||||||| ||||||| || ||||||||||| |||||||||||||||||| |||||||||
Sbjct 1048 CAATTGCGGTTGAAAAAGACGTGACATGGGAGAGGATAAGAGCAGCTCCCGTTGATGCAT 1107
Query 778 CACCTCATCATCTCTATGTGTCAGATTCTCTAAACGAATTAAAACCTGGAGATCACATAG 837
|||| ||| ||||||||||||||||||||||||| || |||||||| ||||| |||||||
Sbjct 1108 CACCCCATAATCTCTATGTGTCAGATTCTCTAAATGAGTTAAAACCCGGAGACCACATAG 1167
Query 838 AGATCCAGTGGAGAAGGAACAAAGAGTTTCCTTATGGATGGTGGTATAGTGTTGTTGGAC 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 AGATCCAGTGGAGAAGGAACAAAGAGTTTCCTTATGGATGGTGGTATAGTGTTGTTGGAC 1227
Query 898 ACTTGGAATCTTGTGATGGCAATCTTAACCATTGTCAATGCCATATTAGCGAGATGATGG 957
|| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1228 ACATGGAATCTTGTGATGGCAATCTAAACCATTGTCAATGCCATAATAGCGAGATGATGG 1287
Query 958 TGTTGGAATTTAACCAGTACACAGTCGGATCAAGGTGGAGAAAAACGATGATTAACAGGA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 TGTTGGAATTTAACCAGTACACAGTCGGATCAAGGTGGAGAAAAACGATGATTAACAGGA 1347
Query 1018 GAGATCATAGAGAGAAAGGTAACGAGGAAGACGGGTTCTATGGAGGAATTCGAAAGCTAA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1348 GAGATCATAGAGAGAAAGGTAACGAGGAAGACGGGTTCTATGGAGGAATTCGAAAAATAA 1407
Query 1078 AATGTAAAGAAGATATAGAAATGTGGAAGCGTCTTTGGCCATCCTCCATCTTGGAGTAGG 1137
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1408 ATTGTAAAGAAGATATTGAAATGTGGAAGCGTCTTTGGCCATCCTCCATCTTGGAGTAGG 1467
Query 1138 ATG 1140
|||
Sbjct 1468 ATG 1470
> AT2G32560.1 | Symbols: | F-box family protein | chr2:13824794-13826986
FORWARD LENGTH=1367
Length=1367
Score = 1275 bits (690), Expect = 0.0
Identities = 997/1144 (87%), Gaps = 26/1144 (2%)
Strand=Plus/Plus
Query 6 AATAGTACTTTCTAAATGCTTCTCTACTTACTCATCACTTGTCTCTCTTT-TTTCTTCTT 64
|||| |||| ||||||||||||||||||| |||||||||||||||||||| ||| |||||
Sbjct 12 AATAATACTGTCTAAATGCTTCTCTACTTTCTCATCACTTGTCTCTCTTTCTTT-TTCTT 70
Query 65 TGCCAAATCT-TTACCCCTTCCTCCATGGGTATCTAAAACCAAAACTTTGCACTCCTTCT 123
| |||||||| || | ||||||||||||| |||| |||||||||| |||| ||||||||
Sbjct 71 TACCAAATCTCTT-TCTCTTCCTCCATGGGCATCTGAAACCAAAACCTTGCTCTCCTTCT 129
Query 124 ACTTC-TCCAAGAACT-TTTTTACGAACAGTCTACACCCA-ACCACACCCGATCTAGCCT 180
||||| | |||||| | |||| ||||| ||||| || |||| || ||||| |||||
Sbjct 130 ACTTCAT-CAAGAA-TCCCTTTATGAACACCCTACA-TCAGACCAAACACGATCCAGCCT 186
Query 181 CTCCGGTGCTCGGCCAAATGTCGATACTTGACCTCCCTGACCTTCCTCTCGATTGCATTC 240
|||||||| ||| |||||||||| | |||||||||||||| || |||| || |||||||
Sbjct 187 CTCCGGTGATCGACCAAATGTCGGTTCTTGACCTCCCTGAGCTGGCTCTTGACTGCATTC 246
Query 241 TTGACAATCTTTCACCCTCTGGACTATGTAGCATGGCTAGGGTCTGTAGCTCGTTAAGAG 300
||||| |||| ||||||||||||| || |||||||||||||| |||||||| || || |
Sbjct 247 TTGACCTTCTTCCACCCTCTGGACTCTGCAGCATGGCTAGGGTTTGTAGCTCCTTGAGGG 306
Query 301 AGAGATGTGTAAGTGATCATCTGTGGGAGAAACACTTGAAGACAAAATGGGGAAAAATCC 360
|||||||||| ||||||||||| ||||||||||| |||||||| |||||||| |||||||
Sbjct 307 AGAGATGTGTTAGTGATCATCTATGGGAGAAACATTTGAAGACCAAATGGGGCAAAATCC 366
Query 361 TTGGACCTTCTGCTCACAAAGAGTGGCAATGC--TATCT-CTCTTCTC-CATATCATCTT 416
|||| ||| ||||||||| ||||||||||||| ||||| |||||| | |||||||||||
Sbjct 367 TTGGCCCTGCTGCTCACAGAGAGTGGCAATGCTATATCTCCTCTTC-CACATATCATCTT 425
Query 417 GATTCTCCTCATCACCAAACTAGTCATCATGG-ATTGACCAAAATCATATCTCTTATTCG 475
|||||||||||||| |||||| | ||| ||| ||| |||||||||| ||||| || ||
Sbjct 426 GATTCTCCTCATCATCAAACTGGGAATCTTGGTTTTG-CCAAAATCATCTCTCTGATCCG 484
Query 476 ATCTCTTTCAT-CGATTTTAGGAGATGATAATCATAGAAGGAGATATCCATCTTCTATTC 534
||||||||||| || |||| |||| ||||| || || ||| ||||| |||||||| | |
Sbjct 485 ATCTCTTTCATCCG-TTTTCCGAGAGGATAAACAAAGGAGGGGATATGCATCTTCTCTGC 543
Query 535 CTCTTGATTCTACCATGAGCTTCTACCTCTCCCTTGAAACAGGTCGTTTTTGGTTCCCAG 594
| |||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 544 CACTTGATTCCAGCATGAGCTGCTACCTCTCCCTTGAAACAGGTCGTTTTTGGTTCCCAG 603
Query 595 CTCAAGTTTACAACCGTGAGAATGGACATGTAGGGTTCATGTTGTCATGCTATGATGCTG 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 604 CTCAAGTTTACAACCGTGAGAATGGACATGTAGGGTTCATGTTGTCATGCTATGATGCGG 663
Query 655 AGCTCAGCTATGACACCCACACTAATACTTTTCAAGCTAGGTATCCACCACATGGTAGAA 714
||||||||||||| || ||||| |||| || ||||| |||||||||||||||||||||
Sbjct 664 AGCTCAGCTATGATACTCACACGGATACGTTCCAAGCCAGGTATCCACCACATGGTAGAC 723
Query 715 GAGCAAT-TGCGATTGAAAAGGATGTGACATGGGAAAGGATAAGAGCAGCTCCCATTGAT 773
||||| | |||||||||||||| |||||||||||| || |||||||||||||||||||||
Sbjct 724 GAGCA-TCTGCGATTGAAAAGGGTGTGACATGGGATAGAATAAGAGCAGCTCCCATTGAT 782
Query 774 GCATCACCTCATCATCTCTATGTGTCAGATTCTCTAAACGAATTAAAACCTGGAGATCAC 833
||||||||||||| |||| |||| ||||||||| |||| || || |||||||||||||||
Sbjct 783 GCATCACCTCATCTTCTCCATGTATCAGATTCTTTAAAAGAGTTGAAACCTGGAGATCAC 842
Query 834 ATAGAGATCCAGTGGAGAAGGAACAAAGAGTTTCCTTATGGATGGTGGTATAGTGTTGTT 893
|| || |||||||||||||||||||||||||| || ||||||||||||||| || |||||
Sbjct 843 ATCGAAATCCAGTGGAGAAGGAACAAAGAGTTCCCATATGGATGGTGGTATGGTCTTGTT 902
Query 894 GGACACTTGGAATCTTGTGATGGCA-ATCTTAACCATTGTCAATGCCATATTAGCGAGAT 952
| ||||||||||| |||||||| | ||| ||||||||| || |||||| |||| ||||
Sbjct 903 CGCCACTTGGAATCCTGTGATGG-AGATCATAACCATTGCCATTGCCATCTTAGTGAGAC 961
Query 953 GATGGTGTTGGAATTTAACCAGTACACAGTCGGATCAAGGTGGAGAAAAACGATGATTAA 1012
| | ||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 962 GGTAGTGTTGGAATTCAACCAGTACACAGTCGGATCAAGGTGGAGAAGAACGATGAT--- 1018
Query 1013 CAGGAGAGATCATAGAGAGAAAGGTAACGAGGAAGACGGGTTCTATGGAGGAATTCGAAA 1072
|| ||||||||||| |||| |||||||||| ||||||||||||||||||||||| |||||
Sbjct 1019 CATGAGAGATCATAAAGAGGAAGGTAACGAAGAAGACGGGTTCTATGGAGGAATCCGAAA 1078
Query 1073 GCTAAAATGTAAAGAAGATATAGAAATGTGGAAGCGTCTTTGGCCATCCTCCATCTTGGA 1132
|||||| ||||||||||| || | ||||||||| |||| ||||| | ||||||||||||
Sbjct 1079 GCTAAATTGTAAAGAAGAGATTGCAATGTGGAAACGTCACTGGCCTTGCTCCATCTTGGA 1138
Query 1133 GTAG 1136
|||
Sbjct 1139 ATAG 1142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56726615850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5