BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933010
Length=1274
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26900.1 | Symbols: | Sodium Bile acid symporter family | c... 1991 0.0
> AT2G26900.1 | Symbols: | Sodium Bile acid symporter family |
chr2:11474952-11477944 REVERSE LENGTH=1508
Length=1508
Score = 1991 bits (1078), Expect = 0.0
Identities = 1206/1269 (95%), Gaps = 3/1269 (0%)
Strand=Plus/Plus
Query 1 CTAAAACCCTTTCGATCACAA-ATGGCTTCCATTTCCAGAATCTTACCAACAGATGGAAG 59
|||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 53 CTAAAACCCTTTTGATCAAAACATGGCTTCCATTTCCAGAATCTTACCAACAGATGGCAG 112
Query 60 ATTAAGTCAATGCAGAATCAACACTTCTTGGGTTCCTACTACGACCAGACCTCAAACCCA 119
|||||||||||||||||||||||| || ||||||||| |||| |||||| ||||||| ||
Sbjct 113 ATTAAGTCAATGCAGAATCAACACCTCGTGGGTTCCTTCTACAACCAGAACTCAAACTCA 172
Query 120 CTTAGATTATCCCAAGTTGGTTTCTGTTAGTAAGTCTGGAATTAGTTTGAGGATTCAGAA 179
|||||||| ||||||||| |||||||||||||| ||||| || |||||||||||||||||
Sbjct 173 CTTAGATTTTCCCAAGTTAGTTTCTGTTAGTAACTCTGGGATAAGTTTGAGGATTCAGAA 232
Query 180 TAGTAAACCCATTAGCCCTGTCTTTGCTCTTGAAGCAACAACTTCGAGGAGGGTTGCTTG 239
||||||||| ||||||||||||||||||||||||||||| | || |||||||||| |||
Sbjct 233 TAGTAAACCTATTAGCCCTGTCTTTGCTCTTGAAGCAACTTCCTCCAGGAGGGTTGTTTG 292
Query 240 TAAAGCTGCTACAGGTGTGTCTGGTGA-TGTACCTGAGAGTACTCCTAAGGAACTTAGTC 298
||||||||| | |||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 293 CAAAGCTGCTGCTGGTGTGTCAGGTGACT-TACCTGAGAGTACTCCTAAGGAACTTAGTC 351
Query 299 AGTATGAGAAGATTATTGAACTTTTGACGACCCTTTTTCCTCTTTGGGTTATTTTGGGAA 358
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 352 AGTATGAGAAGATTATTGAGCTTTTGACAACCCTTTTTCCACTTTGGGTTATTTTGGGAA 411
Query 359 CACTTGTTGGCATCTTCAAGCCCTCTTTAGTTACATGGTTGGAAACAGATCTCTTTACTC 418
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 412 CACTTGTTGGCATCTTCAAGCCATCCTTGGTTACATGGTTGGAAACAGATCTCTTTACTC 471
Query 419 TAGGTCTTGGATTTCTCATGCTTTCTATGGGATTAACTCTTACGTTTGAAGATTTTAGAA 478
|||||||||||||||| |||||||| ||||| || |||||||||||||||||||| ||||
Sbjct 472 TAGGTCTTGGATTTCTTATGCTTTCCATGGGTTTGACTCTTACGTTTGAAGATTTCAGAA 531
Query 479 GATGTTTACGTAATCCATGGACGGTGGGTGTTGGTTTTCTTGCTCAATATATGATCAAGC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GATGTTTACGTAATCCATGGACGGTGGGTGTTGGTTTTCTTGCTCAATATATGATCAAGC 591
Query 539 CAATTCTAGGTTTTCTCATTGCAATGACTCTTAAGCTTTCGGCACCTCTTGCGACTGGTC 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 592 CAATTCTAGGTTTTCTCATTGCAATGACTCTTAAGCTTTCGGCACCTCTTGCGACTGGCC 651
Query 599 TTATCCTAGTCTCATGCTGCCCTGGAGGACAGGCATCTAACGTTGCTACCTACATTTCCA 658
|||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 652 TTATCCTAGTCTCATGCTGCCCTGGAGGACAGGCGTCAAACGTTGCTACTTACATTTCCA 711
Query 659 AGGGGAATGTAGCGCTCTCTGTACTCATGACAACGTGTTCAACCATTGGGGCTATTATAA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 AGGGGAATGTAGCGCTCTCTGTACTCATGACAACGTGTTCAACCATTGGGGCTATTATAA 771
Query 719 TGACTCCACTTCTCACTAAGCTTCTTGCTGGCCAGCTTGTTCCCGTTGATGCTGCTGGAC 778
||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 772 TGACTCCTCTTCTTACTAAGCTTCTTGCTGGTCAGCTTGTTCCCGTTGACGCTGCTGGAC 831
Query 779 TCGCTATTAGTACTTTCCAAGTAGTGTTGGTGCCTACTATAGTTGGAGTTCTGGCTAATG 838
| ||| ||||||| ||||||||||||||||| ||||| ||| ||||||||||||| ||||
Sbjct 832 TTGCTCTTAGTACGTTCCAAGTAGTGTTGGTTCCTACCATAATTGGAGTTCTGGCAAATG 891
Query 839 AGTTCTTTCCTAAATTTACGTCTAAGATCATAACAGTGACGCCTCTAATCGGAGTCATTC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 AGTTCTTTCCTAAATTTACGTCTAAGATCATAACAGTGACGCCTCTAATCGGAGTCATTC 951
Query 899 TGACCACTCTGCTGTGTGCCAGCCCTATTGGACAAGTTTCAGAGGTTTTGAAAACCCAAG 958
|||| |||||||| |||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 952 TGACTACTCTGCTCTGTGCCAGCCCTATTGGACAAGTTGCAGATGTTTTGAAAACCCAAG 1011
Query 959 GAGCTCAACTTATACTCCCGGTGGCACTCCTTCATGCTGCAGCCTTTGCTATTGGCTATT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 GAGCTCAACTTATACTCCCGGTGGCACTCCTTCATGCTGCAGCCTTTGCTATTGGCTATT 1071
Query 1019 GGATTTCAAAGTTTTCTTTCGGCGAGTCCACTTCGCGTACCATATCTATAGAATGTGGCA 1078
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1072 GGATTTCAAAGTTTTCTTTCGGCGAGTCCACTTCGCGTACCATTTCTATAGAATGTGGAA 1131
Query 1079 TGCAAAGTTCAGCGCTCGGGTTCTTACTTGCACAAAAGCATTTCACAAACCCTCTAGTTG 1138
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1132 TGCAAAGTTCAGCGCTCGGGTTCTTGCTTGCACAAAAGCATTTCACAAACCCTCTAGTTG 1191
Query 1139 CTGTTCCTTCCGCAGTCAGTGTTGTCTGTATGGCGCTTGGCGGGAGCGGCCTGGCCGTGT 1198
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 CTGTTCCTTCTGCAGTCAGTGTTGTCTGTATGGCGCTTGGCGGGAGCGGCCTGGCCGTGT 1251
Query 1199 TCTGGAGAAACCTACCAATTCCGGCAGATGACAAGGATGACTTCAAAGAGTAAATGACGT 1258
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1252 TCTGGAGAAACCTACCGATTCCGGCAGATGACAAGGATGACTTCAAAGAGTAAATGAAGT 1311
Query 1259 AGGAAAGGC 1267
|||||||||
Sbjct 1312 AGGAAAGGC 1320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62650280160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5