BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933013
Length=1967
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26920.1 | Symbols: | Ubiquitin-associated/translation elon... 2946 0.0
> AT2G26920.1 | Symbols: | Ubiquitin-associated/translation elongation
factor EF1B protein | chr2:11489004-11491751 FORWARD
LENGTH=2260
Length=2260
Score = 2946 bits (1595), Expect = 0.0
Identities = 1853/1976 (94%), Gaps = 23/1976 (1%)
Strand=Plus/Plus
Query 11 AGGGGTATTGATGTTCTTTGCAGAGATGTCTCCAGCAACAAAGTCAAAGTCTAAGGATaa 70
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 AGGTGTATTGATGTTCTTTGCAGAGATGTCTCCAGCAACAAAGTCAAAGTCTAAGGATAA 206
Query 71 aaaaaCTGGAAAAGAAGCTCAAAAGGCATCACCAAAGCCTACACTTTCGGTTAATGGGAA 130
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 207 AAAAACTGGTAAAGAAGCTCAAAAGGCATCACCAAAGCCTTCACTTTCGGTTAATGGGAA 266
Query 131 TAGCAGCTTAGCAGCTAGTGCTTATAATCCTCTTCTAGGAACATTTCAAGCTCTCGATTC 190
||||||||| |||||||||| ||||||||||||| ||||||||||||||||||| |||||
Sbjct 267 TAGCAGCTTGGCAGCTAGTGGTTATAATCCTCTTTTAGGAACATTTCAAGCTCTTGATTC 326
Query 191 AGTCTCGATAGCTTCTATCTCACCGCTACAGTATGGTCGTTTCCGGAGTATAGATGAAGC 250
||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| ||
Sbjct 327 AGTGTCGATAGCTTCTATCTCACCATTACAGTATAGTCGTTTCCGGAGTATAGATGAGGC 386
Query 251 AGATGTAAATGGGATTGAGTCTGATTCTGTTTCAAACAATGGTAGCTGCTCGGGCGAGTC 310
||||||||||||||||||||||||||| ||||| || ||||||||||| || || |||||
Sbjct 387 AGATGTAAATGGGATTGAGTCTGATTCAGTTTCGAATAATGGTAGCTGTTCTGGTGAGTC 446
Query 311 GGAAGATCACAAGGAGAAAACAACTAGTCTG-CCCTTCAAGCAGGAGGTGATACCAGGTG 369
||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct 447 AGAAGATCACAAGGAGAAAACAACTAATCTGCCCCTT-AAGCAGGAGGTGATACCAGGTG 505
Query 370 CAGACAATGACAAGCGAGAAAAAGTTCGTCAAAAGAATGAGAGAAAACATCAACGCCAGA 429
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 CAGATAATGACAAGCGAGAAAAAGTTCGTCAAAAGAATGAGAGAAAACATCAACGCCAGA 565
Query 430 AAGAGAGGAGGGCTCAGGAGTTGTATGAGAAGTGTAGTACATATCTCATTTCTAGAAAGC 489
| ||||||||||||||||||||| ||||||||||||| |||||||| ||||| |||||||
Sbjct 566 AGGAGAGGAGGGCTCAGGAGTTGAATGAGAAGTGTAGCACATATCTTATTTCCAGAAAGC 625
Query 490 TTGAAGCCCGTATACAGCAACTTGTAGCAATGGGGATATCTCAAGAGCATGCAACAACAG 549
|||||||||||| ||||||| |||| |||||||| ||||||||||||||||| ||||| |
Sbjct 626 TTGAAGCCCGTACACAGCAAATTGTGGCAATGGGAATATCTCAAGAGCATGCGACAACGG 685
Query 550 CATTGATGATGAATGATGGCAAAGTAGAGCAATCTGTTCATTGGTTGTTTGACAGGGGTG 609
|||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||| ||
Sbjct 686 CATTAATGATGAATGATGGTAAAGTAGAGGAATCTGTTCATTGGTTGTTTGATAGGCTTG 745
Query 610 AGGAAGAAATAGAGAAGCAAAGCGTTCAGAGTCCTGGGAATTTGAAAATAGATATAACAG 669
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 746 AGGAAGAAATAGAGAAGCAAAGCATTCAGAGTCCTGGGAATTTGAAAATAGACATAACAG 805
Query 670 AAGAACTAGCTAGGATTACACAAATGGAGCTACAACTTAAGTGTACAAGGCAGGAAATAG 729
|||| ||||||||||||||| |||||||| | ||||||||||||||||||||||||||||
Sbjct 806 AAGAGCTAGCTAGGATTACAAAAATGGAGTTGCAACTTAAGTGTACAAGGCAGGAAATAG 865
Query 730 AGCGTGCGGTTGTTCAAGCAGAGGGTGATTTGGACAGAGCAGAAGAAGTCGTGAAAGGCA 789
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 866 AGCGTGCGGTTGTTCAAGCAGAGGGTGATTTGGACAGAGCAGAAGAAGTCTTGAAAGGCA 925
Query 790 CAAAGTATGAAGAGTTTTCTGTGCCAGTGAAACAAGAAGAATCTAGTGATCCTCTTACAC 849
||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 926 CAAAGTATGAAGAGTTTTCTGTGCCAGTGAAACAAGAGGAATGTGGTGATCCTCTTACAC 985
Query 850 CCAGTAATGGTAAACTTTTAGTAGGAATAGGTTATCAGAATTCAGATGCAGAAAGGCCAG 909
|||||||||| |||||| ||||||||||||||||||||||||| |||| ||||||| |||
Sbjct 986 CCAGTAATGGAAAACTTATAGTAGGAATAGGTTATCAGAATTCGGATGTAGAAAGGTCAG 1045
Query 910 AAATTCCGTCACCTGGCTTACATCCAACAAGAGATGACAAGAACTTTAACTATACAAAAT 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 AAATTCCGTCACCTGGCTTACATCCAACAAGAGATGACAAGAACTTTAACTATACAAAAT 1105
Query 970 CACCCTCCACAACGGAATCCGTGAACAAAATGATGGCTCAGCCAATGAAACGATCCGAAC 1029
||||||||||||| |||||||||||||||||| |||||||||| ||||||||| ||||||
Sbjct 1106 CACCCTCCACAACTGAATCCGTGAACAAAATGTTGGCTCAGCCTATGAAACGACCCGAAC 1165
Query 1030 TGAAGTTAGATTGGCCAAAACCTCAGCAATCTGCTGCTTTGGCTGATAAAAGGTGGCCA- 1088
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 TGAAGTTAGATTGGCCAAAACCTCAGCAATCTGCTGCTTTGGCTGATAAAAGGTGGCCAC 1225
Query 1089 -AAC-ACGGGACAGGTTCCTTCTGCTTCTTACTCCTTGCCATCATCGCCATCGCCGTCAC 1146
||| || |||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 1226 CAACCACAGGACAGGTTCCTTCGGCTTCTTACTCTTTGCCATCATCGCCATCACCGTCAC 1285
Query 1147 CTCAGCCTGCTGTGAGGGTTGAAGCTCGATATTTAGCTAGTGGAAATGAATTTAAGAACC 1206
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1286 CTCAGCCTGCTGTGAGGGTCGAAGCTCGCTATTTAGCTAGTGGAAATGAATTTAAGAACT 1345
Query 1207 -CC--cagcagcagcagcagccagcaAATAGAGAATCAATCATGGTGATGAGGCAGCGGC 1263
|| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1346 TCCAGCAGCAGCAGCAGCAGCCTGCAAATAGAGAATCAGTCATGGTGATGAGGCAGCGGC 1405
Query 1264 CACAAGTTGTAAGCACAAATCCTGTTCCAACCTCAAGCATGAGCGCACCCCCTACCAGTT 1323
|||| ||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1406 CACAGGTTGTAATCACAAATCCCGTTCCAACCTCAAGCATGAGTGCACCCCCTACCAGTT 1465
Query 1324 GGCATCCTACAGCTG-GCATAGAGATAATGAAGTCAAATGGGTTCATGCAAACACATAAT 1382
|||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 GGCATCCTGCAGC-GAGCATAGAGATAATGAAGTCAAATGGGTTCATGCAAACACATAAT 1524
Query 1383 ATCCCTAGTGCGCGAAGCCCGAGTCCAAACCATCTGAATCCAAATCAGATCTACCAGCAA 1442
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1525 ATCCCTAGTGCGCGAAGCCCAAGTCCAAACCATCTGAATCCAAATCAGGTCTACCAGCAA 1584
Query 1443 CTTCAGTTTCAAAACCAGAAGCGATTCACTAACAACAACCAAGTGGATCCACATGGTAGT 1502
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1585 CTTCAGTATCAAAACCAGAAGCGATTCACTAACAACAACCAAGTGGATCCACATGGTAGT 1644
Query 1503 ATGGCCAGAGGGAATGGCGGGTCA-TGGACCAGAAACACAGCATCATCTCCACCCATATC 1561
||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||
Sbjct 1645 ATGGCCAGAGGGAATGGCGGG-CAATGGACTAGAAATACAGCATCATCTCCACCCATATC 1703
Query 1562 TGCTGCGTCTTCACTGGGATTATTTTCTGTGGTTGGTTCAGCCGGAACATCAGGTGCATC 1621
|||||||||||| ||||||||||| |||| |||||||||||| |||||||| ||||||||
Sbjct 1704 TGCTGCGTCTTCGCTGGGATTATTCTCTGCGGTTGGTTCAGCTGGAACATCGGGTGCATC 1763
Query 1622 CTCACCAATAGATTGGATCTCTGGCGGTTCAGTGGACTACACAAGCATAGACTGGAGTCT 1681
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1764 TTCACCTATAGATTGGATCTCTGGCGGTTCAGTGGACTACACAAACATAGACTGGAGTCT 1823
Query 1682 AGATCAAGGTTTATCCCAAAATAGTAGA---AA------CTGGTCAGGGTTAAAGAGCAG 1732
||||||| ||||||| |||||||||||| || |||||| ||||||||||||||
Sbjct 1824 AGATCAAAGTTTATCACAAAATAGTAGAGTCAATGGAAACTGGTCCGGGTTAAAGAGCAG 1883
Query 1733 CAGCCACATATATGATGCA-AACATGAACAGGTACAGTCCAAATGGTTCCATGGGAGGTA 1791
|||||| |||||||||| | ||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1884 CAGCCAAATATATGATG-AGAACATGAACCGGTACAGTCTAAATGGTTCCATGGGAGGTA 1942
Query 1792 GAGTCAACAACAGCAACGGTGTATCTATGGAGAATGCGGGTGTTAGTGTTGTCGTGGAAA 1851
|| |||||||||||||||||||||||||||||||| | |||| | ||||| |||||||||
Sbjct 1943 GACTCAACAACAGCAACGGTGTATCTATGGAGAATTCAGGTGCTGGTGTTATCGTGGAAA 2002
Query 1852 CACAACAAGCAGCTACCTCTCAAGATTGGACTTCACCATTTGAAGGAAAAGATATATTTA 1911
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 2003 CACAACAAGCAGCTACCTCTCCAGATTGGACTTCACCATTTGAAGGAAAAGATATCTTTA 2062
Query 1912 GCTTGTCTAGACAATATGTGTCTCCTTCTCTGTAAGAGCAGAGGAGTTACATATGG 1967
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 2063 GCTTGTCTAGACAATATGTGTCTCCTTCTCTGTAAGAGCATAGGAGTTTCATATGG 2118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97439257845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5