BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg933044 Length=443 Score E Sequences producing significant alignments: (Bits) Value AT1G47960.1 | Symbols: C/VIF1, ATC/VIF1 | cell wall / vacuolar ... 187 7e-47 AT1G47950.1 | Symbols: | transposable element gene | chr1:1767... 187 7e-47 > AT1G47960.1 | Symbols: C/VIF1, ATC/VIF1 | cell wall / vacuolar inhibitor of fructosidase 1 | chr1:17681157-17683629 REVERSE LENGTH=1528 Length=1528 Score = 187 bits (101), Expect = 7e-47 Identities = 215/268 (80%), Gaps = 16/268 (6%) Strand=Plus/Plus Query 41 ATTTGATCAGCAATTTGCCAAATGAGATTCTTACCAAAATTCTGTC-TTCACTTGCGACA 99 ||| ||| |||| ||||||| ||||||| ||| |||||| ||||| || | || |||| Sbjct 760 ATTCGATAAGCAGTTTGCCAGATGAGATACTTGGCAAAATCCTGTCTTTGA-TTCCGAC- 817 Query 100 AAAGTGGTTGCCTCCACA-CAGATTCTGTCCAAGAGGTGGAAGAATCTGCTAGGTCTTGT 158 |||||| ||| || ||| | | ||||||||||||||||||||||||||||| ||||||| Sbjct 818 -AAGTGGCTGCTTCGACATC-GGTTCTGTCCAAGAGGTGGAAGAATCTGCTATGTCTTGT 875 Query 159 AGACACCCTTTGGTTTT-ATGATTCCATGGTTGTGTATCCAAAC-ATAAAGAA-CAAAAA 215 ||||| |||||| |||| |||| || |||||||| ||||| ||| || ||||| ||| | Sbjct 876 AGACAACCTTTG-TTTTGATGAGTCGATGGTTGTTTATCCCAACGATGAAGAAGCAAGAC 934 Query 216 AGGTGGTTTAGACCGCCTC-TGTGATTTCGTAGAGAAGACATTTGCTCTG-TCAAGCAAT 273 | |||| | | ||| || | ||| |||||||| |||||| ||||| || | ||||||| Sbjct 935 -GC-GGTTCACATCGCTTCCT-TGAGTTCGTAGACAAGACACTTGCTTTGCT-AAGCAAT 990 Query 274 TCTCCCATCAAGAAATTATCTCTGCCTC 301 |||| ||| ||||| || |||||| ||| Sbjct 991 TCTCACATGAAGAAGTTCTCTCTGTCTC 1018 > AT1G47950.1 | Symbols: | transposable element gene | chr1:17675488-17681953 REVERSE LENGTH=6466 Length=6466 Score = 187 bits (101), Expect = 7e-47 Identities = 215/268 (80%), Gaps = 16/268 (6%) Strand=Plus/Plus Query 41 ATTTGATCAGCAATTTGCCAAATGAGATTCTTACCAAAATTCTGTC-TTCACTTGCGACA 99 ||| ||| |||| ||||||| ||||||| ||| |||||| ||||| || | || |||| Sbjct 29 ATTCGATAAGCAGTTTGCCAGATGAGATACTTGGCAAAATCCTGTCTTTGA-TTCCGAC- 86 Query 100 AAAGTGGTTGCCTCCACA-CAGATTCTGTCCAAGAGGTGGAAGAATCTGCTAGGTCTTGT 158 |||||| ||| || ||| | | ||||||||||||||||||||||||||||| ||||||| Sbjct 87 -AAGTGGCTGCTTCGACATC-GGTTCTGTCCAAGAGGTGGAAGAATCTGCTATGTCTTGT 144 Query 159 AGACACCCTTTGGTTTT-ATGATTCCATGGTTGTGTATCCAAAC-ATAAAGAA-CAAAAA 215 ||||| |||||| |||| |||| || |||||||| ||||| ||| || ||||| ||| | Sbjct 145 AGACAACCTTTG-TTTTGATGAGTCGATGGTTGTTTATCCCAACGATGAAGAAGCAAGAC 203 Query 216 AGGTGGTTTAGACCGCCTC-TGTGATTTCGTAGAGAAGACATTTGCTCTG-TCAAGCAAT 273 | |||| | | ||| || | ||| |||||||| |||||| ||||| || | ||||||| Sbjct 204 -GC-GGTTCACATCGCTTCCT-TGAGTTCGTAGACAAGACACTTGCTTTGCT-AAGCAAT 259 Query 274 TCTCCCATCAAGAAATTATCTCTGCCTC 301 |||| ||| ||||| || |||||| ||| Sbjct 260 TCTCACATGAAGAAGTTCTCTCTGTCTC 287 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21062186831 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5