BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933044

Length=443
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G47960.1 | Symbols: C/VIF1, ATC/VIF1 | cell wall / vacuolar ...   187    7e-47
  AT1G47950.1 | Symbols:  | transposable element gene | chr1:1767...   187    7e-47


> AT1G47960.1 | Symbols: C/VIF1, ATC/VIF1 | cell wall / vacuolar 
inhibitor of fructosidase 1 | chr1:17681157-17683629 REVERSE 
LENGTH=1528
Length=1528

 Score =  187 bits (101),  Expect = 7e-47
 Identities = 215/268 (80%), Gaps = 16/268 (6%)
 Strand=Plus/Plus

Query  41    ATTTGATCAGCAATTTGCCAAATGAGATTCTTACCAAAATTCTGTC-TTCACTTGCGACA  99
             ||| ||| |||| ||||||| ||||||| |||  |||||| ||||| || | || |||| 
Sbjct  760   ATTCGATAAGCAGTTTGCCAGATGAGATACTTGGCAAAATCCTGTCTTTGA-TTCCGAC-  817

Query  100   AAAGTGGTTGCCTCCACA-CAGATTCTGTCCAAGAGGTGGAAGAATCTGCTAGGTCTTGT  158
              |||||| ||| || ||| | | ||||||||||||||||||||||||||||| |||||||
Sbjct  818   -AAGTGGCTGCTTCGACATC-GGTTCTGTCCAAGAGGTGGAAGAATCTGCTATGTCTTGT  875

Query  159   AGACACCCTTTGGTTTT-ATGATTCCATGGTTGTGTATCCAAAC-ATAAAGAA-CAAAAA  215
             ||||| |||||| |||| |||| || |||||||| ||||| ||| || ||||| ||| | 
Sbjct  876   AGACAACCTTTG-TTTTGATGAGTCGATGGTTGTTTATCCCAACGATGAAGAAGCAAGAC  934

Query  216   AGGTGGTTTAGACCGCCTC-TGTGATTTCGTAGAGAAGACATTTGCTCTG-TCAAGCAAT  273
              |  |||| | | ||| || | ||| |||||||| |||||| ||||| || | |||||||
Sbjct  935   -GC-GGTTCACATCGCTTCCT-TGAGTTCGTAGACAAGACACTTGCTTTGCT-AAGCAAT  990

Query  274   TCTCCCATCAAGAAATTATCTCTGCCTC  301
             |||| ||| ||||| || |||||| |||
Sbjct  991   TCTCACATGAAGAAGTTCTCTCTGTCTC  1018


> AT1G47950.1 | Symbols:  | transposable element gene | chr1:17675488-17681953 
REVERSE LENGTH=6466
Length=6466

 Score =  187 bits (101),  Expect = 7e-47
 Identities = 215/268 (80%), Gaps = 16/268 (6%)
 Strand=Plus/Plus

Query  41   ATTTGATCAGCAATTTGCCAAATGAGATTCTTACCAAAATTCTGTC-TTCACTTGCGACA  99
            ||| ||| |||| ||||||| ||||||| |||  |||||| ||||| || | || |||| 
Sbjct  29   ATTCGATAAGCAGTTTGCCAGATGAGATACTTGGCAAAATCCTGTCTTTGA-TTCCGAC-  86

Query  100  AAAGTGGTTGCCTCCACA-CAGATTCTGTCCAAGAGGTGGAAGAATCTGCTAGGTCTTGT  158
             |||||| ||| || ||| | | ||||||||||||||||||||||||||||| |||||||
Sbjct  87   -AAGTGGCTGCTTCGACATC-GGTTCTGTCCAAGAGGTGGAAGAATCTGCTATGTCTTGT  144

Query  159  AGACACCCTTTGGTTTT-ATGATTCCATGGTTGTGTATCCAAAC-ATAAAGAA-CAAAAA  215
            ||||| |||||| |||| |||| || |||||||| ||||| ||| || ||||| ||| | 
Sbjct  145  AGACAACCTTTG-TTTTGATGAGTCGATGGTTGTTTATCCCAACGATGAAGAAGCAAGAC  203

Query  216  AGGTGGTTTAGACCGCCTC-TGTGATTTCGTAGAGAAGACATTTGCTCTG-TCAAGCAAT  273
             |  |||| | | ||| || | ||| |||||||| |||||| ||||| || | |||||||
Sbjct  204  -GC-GGTTCACATCGCTTCCT-TGAGTTCGTAGACAAGACACTTGCTTTGCT-AAGCAAT  259

Query  274  TCTCCCATCAAGAAATTATCTCTGCCTC  301
            |||| ||| ||||| || |||||| |||
Sbjct  260  TCTCACATGAAGAAGTTCTCTCTGTCTC  287



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21062186831


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5