BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933048

Length=893
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G35890.1 | Symbols:  | NAC (No Apical Meristem) domain trans...   167    2e-40


> AT1G35890.1 | Symbols:  | NAC (No Apical Meristem) domain transcriptional 
regulator superfamily protein | chr1:13341300-13341953 
FORWARD LENGTH=516
Length=516

 Score =  167 bits (90),  Expect = 2e-40
 Identities = 124/140 (89%), Gaps = 4/140 (3%)
 Strand=Plus/Plus

Query  389  GGACGAAGATAAATTTCAGGAGCTAGTCCTCTGCAAGATTCACAAGAAAAAGAAGTCCAA  448
            ||| |||||||| ||| ||||  ||||| |||| |||||||| ||| | |||||||||||
Sbjct  200  GGAAGAAGATAAGTTTGAGGA--TAGTCGTCTGGAAGATTCAGAAGTATAAGAAGTCCAA  257

Query  449  GAAGGACAAGAAGGATCATCAGCATGAAGCTTCTTCTTCCTC-AGAGCAGCAGCCGATCA  507
            |||||||||||||||||||||||||||||| ||||||||||| | ||| |||||||||||
Sbjct  258  GAAGGACAAGAAGGATCATCAGCATGAAGCATCTTCTTCCTCTA-AGCCGCAGCCGATCA  316

Query  508  AGAAAAGGAAGTCCAAAAAG  527
            |||||| ||||||||| |||
Sbjct  317  AGAAAAAGAAGTCCAAGAAG  336



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 43603239596


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5