BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg933049 Length=448 Score E Sequences producing significant alignments: (Bits) Value AT1G47389.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 99.0 3e-20 > AT1G47389.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17378652-17379374 FORWARD LENGTH=723 Length=723 Score = 99.0 bits (53), Expect = 3e-20 Identities = 93/111 (84%), Gaps = 8/111 (7%) Strand=Plus/Plus Query 336 TTGTCCGTGTGATGACT-ATATGGTTCATTCACGGTGTTTTTCCGGGTATGCTCGG-CGT 393 ||||||||||||||| | |||||||||||||||||||||||||||||||||| ||| | | Sbjct 155 TTGTCCGTGTGATGA-TAATATGGTTCATTCACGGTGTTTTTCCGGGTATGCCCGGTC-T 212 Query 394 TTTCGGTTTGG-AGACAATAATTGTCGACAGT-GATTTAGTGAAAATTTGC 442 | || || ||| || ||||| ||| | ||| | | |||| || |||||||| Sbjct 213 TCTCAGTCTGGCAG-CAATAGTTGCCAACA-TCGTTTTAATGCAAATTTGC 261 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21313525576 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5