BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933050
Length=373
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27000.1 | Symbols: CYP705A8 | cytochrome P450, family 705, ... 418 2e-116
AT4G15350.1 | Symbols: CYP705A2 | cytochrome P450, family 705, ... 276 1e-73
AT3G20960.1 | Symbols: CYP705A33 | cytochrome P450, family 705,... 198 3e-50
> AT2G27000.1 | Symbols: CYP705A8 | cytochrome P450, family 705,
subfamily A, polypeptide 8 | chr2:11523304-11525095 REVERSE
LENGTH=1716
Length=1716
Score = 418 bits (226), Expect = 2e-116
Identities = 327/375 (87%), Gaps = 9/375 (2%)
Strand=Plus/Plus
Query 1 TTGTTATTAATGGTTATGCTATAATGAGAGATCCTAATAACTGGGAAGATCCTCTGGAGT 60
||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1193 TTGTTGTTAATGGTTATGCTATAATGAGAGATCCTGATAACTGGGAAGATCCACTGGAGT 1252
Query 61 TTAAACCCGAGAGGTTTCTTGATTCTTCAAGATCAAGCCAAAAGGACGCGATAAAAGAAG 120
||||||| ||||||||||| | ||||||||||||||||||||| ||||| ||||||||||
Sbjct 1253 TTAAACCAGAGAGGTTTCTAGCTTCTTCAAGATCAAGCCAAAAAGACGCAATAAAAGAAG 1312
Query 121 AAGTCCTAAGATA-CATTGCTTTCGGGAGTGGAAGGAGAGGCTGTCCTGGAGCAAATCTA 179
|||| |||| ||| | || | ||||| || ||||||||||| |||||||||| ||||||
Sbjct 1313 AAGTTCTAAAATATC-TTTCATTCGGAAGCGGAAGGAGAGGATGTCCTGGAGTGAATCTA 1371
Query 180 GCTTATCTCTCTGTAGAAACTGCTATTGGAGTGATGGTGCAATGCTTTGATTGGAAGATC 239
|||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1372 GCTTATGTGTCTGTAGAAACCGCTATTGGAGTGATGGTGCAATGCTTTGATTGGAAGATC 1431
Query 240 AAAGGAGATAAGATCAACATGAATGAGGCTGCTGGAAAAATAACTATT-ACCATGGC-CA 297
| ||| ||||||||||||||||||||| |||||| ||| ||| || | |||||| ||
Sbjct 1432 GACGGACATAAGATCAACATGAATGAGGTTGCTGGTAAAGGAACG-TTGAGCATGGCTCA 1490
Query 298 ATCCTCTTACGTGCAGTCTTGTTCCTCGAACCCAAATCTCTTTAAGTTCAAAGTAGGCAG 357
|||||||| ||||| |||||||||||||| || | | |||| |||||||||||||
Sbjct 1491 -TCCTCTTAAGTGCACTCTTGTTCCTCGAAGTGTAACCCCATTAACTTCAAAGTAGGCA- 1548
Query 358 ATTCCTACTTCTTGA 372
|| | ||||||||||
Sbjct 1549 AT-C-TACTTCTTGA 1561
> AT4G15350.1 | Symbols: CYP705A2 | cytochrome P450, family 705,
subfamily A, polypeptide 2 | chr4:8762953-8764594 FORWARD
LENGTH=1561
Length=1561
Score = 276 bits (149), Expect = 1e-73
Identities = 285/349 (82%), Gaps = 16/349 (5%)
Strand=Plus/Plus
Query 1 TTGTTATTAATGGTTATGCTATAATGAGAGATCCTAATAACTGGGAAGATCCTCTGGAGT 60
||||| | ||| |||||||||||||||||||||| || |||||||||||| ||||
Sbjct 1181 TTGTTGTCAATTCTTATGCTATAATGAGAGATCCTGATTTTTGGGAAGATCCTGACGAGT 1240
Query 61 TTAAACCCGAGAGGTTTCTTGAT-T-CTTCAAGATCAAGCCAAAAGGACGCGATAAAAGA 118
|||| || ||||| ||| || || | |||||||||| | ||| |||||| ||||| |||
Sbjct 1241 TTAAGCCAGAGAGATTT-TT-ATCTATTTCAAGATCAGGGCAAGAGGACGAGATAAGAGA 1298
Query 119 -AGAAGTCCTAAGATACATTGCTTTCGGGAGTGGAAGGAGAGGCTGTCCTGGAGCAAATC 177
| || |||||| ||||||| |||| | || || |||||||| ||||| ||| ||||||
Sbjct 1299 TA-AATTCCTAAAATACATTCCTTTTGCCAGCGGCAGGAGAGGTTGTCCAGGAACAAATC 1357
Query 178 TAGCTTAT-CTCTCTGTAGAAACTGCTATTGGAGTGATGGTGCAATGCTTTGATTGGAAG 236
|||||||| || ||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 1358 TAGCTTATGCT-TCTGTAGGAACCGCGGTTGGAGTGATGGTGCAATGCTTTGATTGGAAA 1416
Query 237 ATCAAAGGAGATAA-GATCAACATGAATGAGGCTGCTGGAAAAATAACTATT-ACCATGG 294
|| ||||||| || | |||||||||||||||||||||||| ||| | || |||||||
Sbjct 1417 ATTGAAGGAGAGAATG-TCAACATGAATGAGGCTGCTGGAACAATGG-TGTTGACCATGG 1474
Query 295 C-CAATCCTCTTACGTGCAGTCTTGTTCCTCGAACCC-AAATCTCTTTA 341
| || ||||||| ||||| || |||||||||||||| ||| || ||||
Sbjct 1475 CTCAC-CCTCTTAAGTGCACTCCTGTTCCTCGAACCCTAAACCT-TTTA 1521
> AT3G20960.1 | Symbols: CYP705A33 | cytochrome P450, family 705,
subfamily A, polypeptide 33 | chr3:7345436-7347104 FORWARD
LENGTH=1583
Length=1583
Score = 198 bits (107), Expect = 3e-50
Identities = 265/337 (79%), Gaps = 27/337 (8%)
Strand=Plus/Plus
Query 4 TTATTAATGGTTATGCTAT-AATGAGAGATCCTAATAACTGGGAAGATCCT-CTGGAGTT 61
|||| |||| ||| ||| | |||||||||||| || ||||||||||||| | |||||
Sbjct 1129 TTATAAATGCTTACGCT-TGGATGAGAGATCCTGATTCCTGGGAAGATCCTAAT-GAGTT 1186
Query 62 TAAACCCGAGAGGTTTCTT-GATTCTTCAAGATCAAGCCAAAAGGACG-CGATAAAAGAA 119
||| || ||||||||| || | ||||||||||| || | ||| | | ||| | |||
Sbjct 1187 TAAGCCGGAGAGGTTT-TTAGGTTCTTCAAGAT-TAG-GACAAGTA-GACGA-GAGAGAG 1241
Query 120 GAAG-TCCTAAGATACATTGCTTTCGG-GAGTGGAAGGAGAGGCTGTCCTGGAGCAAATC 177
|||| || ||| |||||| ||||||| | | ||||||||||||||||||||||||||||
Sbjct 1242 GAAGCTCAGAAG-TACATTCCTTTCGGCG-GAGGAAGGAGAGGCTGTCCTGGAGCAAATC 1299
Query 178 TAGCTTATCTCT-CTGTAGAAACTGCTATTGGAGTGATGGTGCAATGCTTTGATTGGAAG 236
|||||| | | | | |||| ||| || ||||||||||||||||| |||||||| ||| |
Sbjct 1300 TAGCTTCTATTTTC-GTAGGAACCGCGATTGGAGTGATGGTGCAGTGCTTTGACTGGG-G 1357
Query 237 A-TCAAAGGAGATAAGATCAACATG-AATGAGGCTGCTGGAAAAA-TAACTATTACCATG 293
| ||||||||||||||||||||||| || ||| || || || | | || ||||||||
Sbjct 1358 AATCAAAGGAGATAAGATCAACATGGAA-GAGACTTTTG-AAGGACTGACCCTTACCATG 1415
Query 294 GC-CAATCCTCTTACGTGCAGTCTTG-TTCCTCGAAC 328
| || ||| ||| ||||| || | ||||||||||
Sbjct 1416 GTTCA-TCCAATTAAGTGCACTCC-GATTCCTCGAAC 1450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17543444401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5