BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933062
Length=271
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58010.1 | Symbols: PGL34 | plastoglobulin 34kD | chr3:21475... 351 1e-96
> AT3G58010.1 | Symbols: PGL34 | plastoglobulin 34kD | chr3:21475805-21477569
REVERSE LENGTH=1177
Length=1177
Score = 351 bits (190), Expect = 1e-96
Identities = 237/259 (92%), Gaps = 5/259 (2%)
Strand=Plus/Plus
Query 13 CTTCTTCAATGGCATTGATCCAACATGCTTTGGTTTCTGGGACCTCTGCGGTTCGATTGA 72
||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 99 CTTATTCAATGGCATTGATCCAACATGGTTCGGTTTCTGGGACCTCTGCGGTTCGATTGA 158
Query 73 GCTTATCATCCTCCGTATCACCAACGTCGTCTTCTCCTCCGCCGTCAAGGGTCTCTCTCC 132
|||| |||||||| ||||||||| |||||||||||||||| | ||||||||| ||||||
Sbjct 159 GCTTCTCATCCTCTGTATCACCACCGTCGTCTTCTCCTCCACTGTCAAGGGTTTCTCTC- 217
Query 133 AATTT-CAGTCGGAGAAGAAGAGTTGTTGCCGGAGAATGATATGCAGAAG-TATGGTTCA 190
||||| |||||||||||||||||||||| ||||||||||||||||||| | |||||||||
Sbjct 218 AATTTTCAGTCGGAGAAGAAGAGTTGTTACCGGAGAATGATATGCAGA-GCTATGGTTCA 276
Query 191 AGACGCCGTTCAAGTAATTCCTTCGGTTTACGCCAGAGAAAATAGAGCGTCTCTCTGCTA 250
|||| | ||||||| |||||||| |||||||||||||||| | ||||||||||||||||
Sbjct 277 AGACTCGGTTCAAGGGATTCCTTCAGTTTACGCCAGAGAAA-TGGAGCGTCTCTCTGCTA 335
Query 251 AGGAATCACTTATTCTCGC 269
||||||| |||||||||||
Sbjct 336 AGGAATCGCTTATTCTCGC 354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12416134003
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5