BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933067
Length=3110
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27060.1 | Symbols: | Leucine-rich repeat protein kinase fa... 4806 0.0
> AT2G27060.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr2:11551041-11554775 FORWARD LENGTH=3508
Length=3508
Score = 4806 bits (2602), Expect = 0.0
Identities = 2951/3119 (95%), Gaps = 26/3119 (1%)
Strand=Plus/Plus
Query 1 AATTGCTCAGTTTTGAAGTCATGCAGATAATATGTTCGATGATATTCCTGTTAGTGATGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 AATTGCTCAGTTTTGAAGTCATGCAGATAATATGTTCGATGATATTCCTGTTAGTGATGA 287
Query 61 TAATGATTACCGTTTCAGGGTTTTCCGACTTTGAAGCTCTTTTGGAGCTTAAGAAAGGTT 120
| |||| | |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 288 TGGTGATGAAAGTTTCAGGTTTTTCTGACTTTGAAGCTCTTTTGGAGCTTAAGAAAGGTT 347
Query 121 TTCAGAGTGACCCTTTTGGAAAAGTTCTTGCTTCGTGGGATGCTAAAGCTTTATCCACTG 180
||||| ||||||||| | ||||||||||| |||| ||||||||||||||||||||| |||
Sbjct 348 TTCAGGGTGACCCTTCTCGAAAAGTTCTTACTTCATGGGATGCTAAAGCTTTATCCTCTG 407
Query 181 ATAGGTGTCCGTTAAACTGGTACGGAGTTACTTGTAGTAGCGGAGGTGTTACTTCCATTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 408 ATAGGTGTCCGTTAAACTGGTACGGAGTTACTTGTAGTAGCGGAGGTGTTACTTCTATTG 467
Query 241 ATTTGAATGGTTTAGGTTTGCTTGGGAATTTCAGTTTCCCAGTCATTGTTGGTCTAAGAA 300
||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||||| ||||
Sbjct 468 ATTTGAATGGTTTCGGTCTGCTTGGGAGTTTCAGTTTTCCAGTCATTGTTGGTCTGAGAA 527
Query 301 TGCTTCAGAATTTGTCGATTTCGAATAATCAGTTT-GCTGGAACTCTCTCTAACATTGGT 359
|||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||
Sbjct 528 TGCTTCAGAATTTGTCGATTGCGAATAATCAGTTTAG-TGGAACTCTCTCTAACATTGGT 586
Query 360 TCTTTTAA-GTCTCTTAAGTATTTGGATGTTTCGGGTAACTTGTTCCGTGGCTCGTTACC 418
|| |||| |||||||||||| ||||||||||||||||||||||||| |||| | |||||
Sbjct 587 TC-GTTAACGTCTCTTAAGTACTTGGATGTTTCGGGTAACTTGTTCCATGGCGCATTACC 645
Query 419 TTCTGGAATTGAGAATTTGAGGAACCTTGAGTTTGTGAATCTCTCTGGTAACAATAATC- 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 646 TTCTGGAATTGAGAATTTGAGGAACCTTGAGTTTGTGAATCTCTCTGGTAACAACAA-CT 704
Query 478 TGGGAGGAGTGGTTCCTGCTGGTTTTGGGAGTCTT-CAGAAGTTGCAGTACCTTGATTTG 536
||||||||||| ||||| ||||||||||||||||| | |||||| ||||||||||||||
Sbjct 705 TGGGAGGAGTGATTCCTTCTGGTTTTGGGAGTCTTGC-CAAGTTGAAGTACCTTGATTTG 763
Query 537 CAAGGCAATAGTTTCTCTGGGGAAGTGATGAGTCTGTTTTCACAGCTAATTAGTGTGGAG 596
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 CAAGGCAACAGTTTCTCTGGGGAAGTGATGAGTCTGTTTTCACAGCTAATTAGTGTGGAG 823
Query 597 TATGTAGATATAAGCAGGAACAACTTCTCGGGTTCGCTTGATCTGGGTCTCGCAAAGACA 656
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 824 TATGTAGATATAAGCAGGAACAACTTCTCGGGTTCGCTTGATCTGGGTCTAGCAAAGTCA 883
Query 657 AGCTTTGTTTCTTCGATTCGTTATTTGAACGTAAGTGGGAATTCTTTGGTAGGGGAGCTA 716
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 884 AGCTTTGTTTCCTCGATTCGTCATTTGAACGTAAGTGGGAATTCTTTGGTAGGGGAGCTA 943
Query 717 TTTGCTCATGATGGCATCCCATTTTTCGATAGCTTAGAAGTGTTGGATGCTAGCAGTAAT 776
|||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||| |||
Sbjct 944 TTTGCTCATGATGGTATCCCCTTTTTCGATAGCTTAGAGGTGTTTGATGCTAGCAGCAAT 1003
Query 777 CGATTGTCTGGTTCTGTTCCAGTCTTCAGTTTTGTTGTCTCTCTCAAGATTCTTCGGTTG 836
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1004 CAATTGTCTGGTTCTGTTCCAGTCTTCAGCTTTGTTGTCTCTCTCAAGATTCTTCGGTTA 1063
Query 837 CAAGACAATCAGTTGTCGGCTTCTTTACCACCGGGCCTTCTGCAAGAGAGTTCGACCATC 896
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1064 CAAGACAATCAGTTGTCGGCTTCTTTACCACCGGGCCTTCTGCAAGAGAGTTCAACCATC 1123
Query 897 TTAACTGAGCTAGATCTTAGCCTCAATCAACTTGAAGGTCCTGTCGGAAGTATAACCTCT 956
|||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1124 TTAACTGACCTTGATCTTAGCCTCAATCAACTTGAAGGTCCTATCGGAAGTATAACCTCT 1183
Query 957 TCCACACTAGAGAAGCTCAATTTGTCTTCAAATAGACTATCCGGATCCTTACCTCTGAAG 1016
|| |||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||
Sbjct 1184 TCAACACTAGAGAAGCTCAATTTGTCTTCAAATAGACTATCGGGATCATTACCTTTGAAA 1243
Query 1017 GTAGGGCATTGTGCCATTATTGATCTGAGTAACAATAAGATTTCAGGAGACTTGTCAAGG 1076
|| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1244 GTTGGACATTGTGCCATTATTGATCTGAGTAACAATAAGATATCAGGAGAATTGTCAAGG 1303
Query 1077 ATACAGAATTGGGGGGATTCTATAGAAAATATTCGGTTGAGTTCAAACTCACTCACTGGA 1136
|||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1304 ATACAGAATTGGGGAGATTCTGTAGAAATTATTCGGTTGAGTTCAAACTCACTCACTGGA 1363
Query 1137 ACACTACCTGGCCAAACTTCTCAATTCTTGAGGCTGACTTCACTCGAGGTTGCTAACAAC 1196
||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||
Sbjct 1364 ACACTACCTGGCCAAACTTCTCAATTCCTGAGGCTGACTTCACTCAAGGCTGCTAACAAC 1423
Query 1197 TCGTTGCAGGGTGTACTACCATTTATTTTAGGAACGTATCCTGAACTTAAAGGGATTGAT 1256
|||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||
Sbjct 1424 TCGTTGCAGGGTGTACTACCATTTATTTTAGGAACGTATCCTGAGCTGAAAGAGATTGAT 1483
Query 1257 CTCAGTCACAACCAGCTTAATGGCGTCCTACCGAGTAATCTGTTCATATCTGCAAAGTTG 1316
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1484 CTCAGTCACAACCAGCTTAGTGGCGTCATACCGAGTAATCTGTTCATATCTGCAAAGTTG 1543
Query 1317 ACGGATCTCAACCTATCAAATAATAATTTCTCTGGTTCACTTCCTCTTCAAGATGCAAGT 1376
||||| |||||| | ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1544 ACGGAACTCAACTTGTCAAACAATAATTTCTCTGGTTCTCTTCCTCTTCAAGATGCAAGT 1603
Query 1377 ACTGCGGGAAACCTCAGCTTGACCAATATTGGCCTGTCGCATAACTCCTTAGGTGGAGTT 1436
|||| ||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 1604 ACTGTGGGAAACCTTAGCTTGACCAATATTGGTCTGTCTCATAACTCGTTAGGTGGAGTT 1663
Query 1437 CTCTCAGAGGAACTAACTCGCTTCCACAATCTGATTTCTCTTGACCTTTCTTATAACAAC 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 CTCTCAGAGGAACTAACTCGCTTCCACAATCTGATTTCTCTTGACCTTTCTTATAACAAC 1723
Query 1497 TTTGAAGGGAATATCCCTGATGGCCTCCCGGACAGCCTAAAGGTGTTCACTGTCTCTGCC 1556
|||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||
Sbjct 1724 TTTGAAGGGAATATCCCTGATGGCCTTCCAGACAGCCTAAAGATGTTCACTGTCTCTGCC 1783
Query 1557 AATAATCTCTCTGGAAATGTGCCGGAGAATCTTAGACGGTTTCCAGATTCAGCGTTTCAT 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1784 AATAATCTCTCTGGAAATGTGCCGGAGAATCTTAGACGGTTTCCAGATTCAGCGTTTCAT 1843
Query 1617 CCAGGGAACGACTT-ACTGAATGTCCCCGTTTCTCCAGAAACACCAGTAGATAAAACAGA 1675
|||||||||| ||| ||||||||||||| |||||| | || | || | |||||||||
Sbjct 1844 CCAGGGAACG-CTTTACTGAATGTCCCCATTTCTCTACCAA-A--AG-A--TAAAACAGA 1896
Query 1676 TATGACCTTGCGGAAGCATAGGTATCATATGAAGTCTTCCGTAAAGGCAGCCCTGATCAT 1735
||| ||||| ||||||||| |||||||||||||| |||| ||||||||||||||||||||
Sbjct 1897 TATAACCTTACGGAAGCATGGGTATCATATGAAGACTTCTGTAAAGGCAGCCCTGATCAT 1956
Query 1736 AGGCTTGGTTGTGGGTGCTGCTCTACTTGCTCTTGTTTGTGCAATGTTTCATTTTACGTC 1795
||||||||| |||||| |||||||||||||||||||||| | |||||||||||||| ||
Sbjct 1957 AGGCTTGGTCGTGGGTACTGCTCTACTTGCTCTTGTTTGCGTAATGTTTCATTTTATGTT 2016
Query 1796 GAGAAAGCAACATGATGAAGAGAAGTCGGATGTTACTGGAGAAAAGAGCATTGTTCAAAA 1855
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||
Sbjct 2017 GAGAAAGCAACATGATGAAGAGAAGTCGGATGTGACTGGAGAAAAGAGTATTGTTCCAAA 2076
Query 1856 AACTGAACCTTCTTCTTCCAATGTGATTGCAGCAAAAAACAGTGTACAGGAAAATGAATC 1915
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2077 AACTGAACCTTCTTCTTCCAATGTGATTGCAGCAAAGAACAGTGTACAGGAAAATGAATC 2136
Query 1916 TTCGTCTTCTACTACTTCTACTCCCTCAATCAAAGCCAAGCTACCGGTTTCTTCTTCACG 1975
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2137 TTCGTCTTCTACTACTTCTACTCCCTCAATCAAGGCCAAGCTACCGGTTTCTTCTTCACG 2196
Query 1976 TTTCTCCCAATATAGTGACTCTGAGAATTCTTCACCATTTTTGAAAGAACCTA-CAGAGG 2034
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 2197 TTTCTCCCAATATAGTGACTCTGAGAATTCTTCACCATTTTTGAAAGAACCTAAC-GAGG 2255
Query 2035 AGCTTCATTCTGACTCAACAAGAAAAGATGAAGCCTTGTCATCCCAAGTATCTTCTTCAA 2094
||||||| ||||| || || ||||||||||| ||||||||||||||||||||||||||
Sbjct 2256 AGCTTCACTCTGAATC--CA-GAAAAGATGAAATCTTGTCATCCCAAGTATCTTCTTCAA 2312
Query 2095 CTCCATCGCTGCCTAAAATCCAGAATTCACCTGATAATCCTAGGTCTCGCCAAACTTCTA 2154
||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||
Sbjct 2313 CTCCATCGCTGCCTAAAATCCAGAATTCACCAGATAATCCTACGTCTCGCCAGACTTCTA 2372
Query 2155 TGAGATTGGATGGGAACCTGTATATATTCGACAGTTCTCTTAAGCTTACAGCAGAGGAAC 2214
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 2373 TGAGATTGGATGGGAACCTGTATATTTTCGACAGTTCTCTTAAGCTTACTGCAGAGGAAC 2432
Query 2215 TGTCTCGTGCTCCGGCTGAAGCTATCGGAAGGAGCTGCCATGGAACGCTGTACAGAGCAG 2274
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 2433 TGTCTCGTGCTCCGGCTGAAGCTATCGGAAGGAGTTGCCATGGAACGCTGTACAGGGCAG 2492
Query 2275 TGCTCAATTCTGATTCTGTATTAGCAGTCAAATGGTTGAGGGAAGGGACTGCAAAAGGTA 2334
|||| |||||||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 2493 TGCTTAATTCTGATTCTGTATTAGCGGTCAAATGGTTAAGAGAAGGGACTGCAAAAGGTA 2552
Query 2335 AGAAGGAATTTGCAAGGGAGATaaaaaaaaTTGGGAACATCAATCACCCAAATCTTGTTT 2394
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 2553 AGAAGGAATTTGCAAGGGAGATAAAGAAACTTGGGAACATCAATCACCCAAATCTTGTTT 2612
Query 2395 CTCTTCAGGCTTACTATTGGGGTCCGAAAGAACACGAGAAGCTCATCATATCAAGATACA 2454
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2613 CTCTTCAGGCTTACTATTGGGGTCCAAAAGAACACGAGAAGCTCATCATATCAAGATACA 2672
Query 2455 TGGATGCACCCTGTTTAGCTTTCTATCTCCAAGAGGCTGGACAGCTAAACCTCCCACCAT 2514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2673 TGGATGCACCCTGTTTAGCTTTCTATCTCCAAGAGGCTGGACAGCTAAACCTCCCACCAT 2732
Query 2515 TGTTACTTGAAAATCGTCTTAAAATTACTCTGGACATAGCCAGTTGTCTTAGTTACCTGC 2574
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2733 TGTTACTGGAAAACCGTCTTAAAATTACTCTGGACATAGCCAGTTGTCTTAGTTACCTGC 2792
Query 2575 ACAATGGGGAAGCAATTCCACATGGGAATCTAAAATCAACTAATGTTCTCCTGAAACCTC 2634
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2793 ACAATGGGGAAGCAATTCCACACGGGAATCTAAAATCAACTAATGTTCTCCTGAAACCTC 2852
Query 2635 CTGAACTCACTGCACACCTAACAGATTACAGTCTTCATCGGTTAATCACACCAGAAGCCA 2694
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2853 CTGAACTCACTGCACACCTAACAGATTATAGTCTTCATCGATTAATCACACCAGAAGCCA 2912
Query 2695 CGTCAGAGCAAGTCTTGAATGCAGCTGCTCTCGGCTACTGCCCTCCAGAGTTTGCCAGCT 2754
||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 2913 CGTCAGAGCAAGTCTTGAACGCAGCTGCCCTTGGCTACTGCCCTCCAGAGTTTGCCAGCT 2972
Query 2755 CGAGTAAACCGTATCCTTCTCTGAAAAGCGATGTGTATGCCTTTGGGGTCATTTTGTTAG 2814
||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 2973 CGAGTAAACCGTACCCTTCTCTGAAAAGCGATGTCTATGCCTTTGGAGTCATTTTGTTAG 3032
Query 2815 AGCTTCTAACAGGAAAGGTATCAGGAGATATAGTTTGCAGTGATCCAGGGGTCGTTGAAC 2874
|||||||||||||||| || || ||||||||||| |||||||||||||| ||||||||||
Sbjct 3033 AGCTTCTAACAGGAAAAGTTTCGGGAGATATAGTGTGCAGTGATCCAGGTGTCGTTGAAC 3092
Query 2875 TCACTGAATGGGTTCTACTGCTTGTGGGACAAAACCGTGCAACTGAGTGTTTTGATCCAT 2934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3093 TCACTGAATGGGTTCTACTGCTTGTGGGACAAAACCGTGCAACTGAGTGTTTTGATCCAT 3152
Query 2935 CCATTATTGGGTCACAGGGCTCAAGGAATGC-TTCTGGAGTTCTTACTGATGTCTTGCAG 2993
| ||| |||| |||||||||||||||||| | || ||| |||||||||||||||||||||
Sbjct 3153 CGATTGTTGGATCACAGGGCTCAAGGAATCCCTT-TGGGGTTCTTACTGATGTCTTGCAG 3211
Query 2994 GTTGCTCTGAGCTGTATCTCACCAGCACCAGAGAGACCGGATATGAAGTTGGTCTCTCAA 3053
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 3212 GTTGCTCTGAGCTGTATCTCACCAGCACCAGAGAGACCGGATATGAAGCTAGTCTCTCAA 3271
Query 3054 GAGCTCTCCAGAATTGTTCTCAAGAGGACA--AA-CTAGAAGAGCTTTCTCTGTGAATG 3109
|||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||
Sbjct 3272 GAGCTCTCCAGAATTGTTCTCAAGAGGACAGCAATCTAGAAGAGCTTTCTTTGTGAATG 3330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 154664685269
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5