BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933094

Length=356
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G23820.1 | Symbols:  | MD-2-related lipid recognition domain...   220    5e-57


> AT5G23820.1 | Symbols:  | MD-2-related lipid recognition domain-containing 
protein | chr5:8031268-8033020 FORWARD LENGTH=824
Length=824

 Score =  220 bits (119),  Expect = 5e-57
 Identities = 173/198 (87%), Gaps = 8/198 (4%)
 Strand=Plus/Plus

Query  125  AAACTTACAATCTCTGTGATGTGAGTGCTTGTAACACTGAAGCTGAGATTGAAGCTGGCA  184
            |||||||||| || |||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct  387  AAACTTACAACCTTTGTGATGTGAGTGCATGTAACAATGAAGCTGAGATTGAAGCTGGCA  446

Query  185  CCAACTTTGTGTTGACTCTTCCCGAAGTTCTTTATGTTGGTTTTGATGAGGAACTCAAGT  244
            ||||||||| ||| |||||| |||| |||||||||||||||| |||||||||| ||||||
Sbjct  447  CCAACTTTGAGTTAACTCTTTCCGACGTTCTTTATGTTGGTTATGATGAGGAAATCAAGT  506

Query  245  ACTCAGTTTCTTTGCGCCAAAAGTACGT--G-G-ACGAG---CCAATAATAAATATGTGT  297
            |||| || |||||||||| |||| || |  | | | |||   ||||||||||| ||||||
Sbjct  507  ACTCGGTATCTTTGCGCCGAAAG-ACCTTAGAGGAGGAGGATCCAATAATAAAAATGTGT  565

Query  298  GTCGACTTCAAACTACCT  315
            |||||||||||| |||||
Sbjct  566  GTCGACTTCAAAGTACCT  583



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16688892668


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5