BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933102

Length=924
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G22080.1 | Symbols:  | TRAF-like family protein | chr3:77778...   139    4e-32


> AT3G22080.1 | Symbols:  | TRAF-like family protein | chr3:7777818-7781718 
REVERSE LENGTH=1947
Length=1947

 Score =  139 bits (75),  Expect = 4e-32
 Identities = 385/528 (73%), Gaps = 47/528 (9%)
 Strand=Plus/Plus

Query  335   TGGGGATTGCCGCAAGTACTTCC-GCTTAG-TACATTCAAAGACCCTGAAAATGG--ATA  390
             ||||||||| ||||||| ||||| | || | ||||||||  || ||| |||| ||  |||
Sbjct  1378  TGGGGATTGGCGCAAGTGCTTCCAG-TT-GATACATTCACTGATCCTAAAAACGGATATA  1435

Query  391   TGTCTG-TCTAGGTCAATGCGAGTTTGGTGTTGATGTCATTGTTGCACCACCCCCTACCA  449
             | | ||    || |||||||||||||||||||||||||||||||||  |||| ||||| |
Sbjct  1436  TTTTTGAGGGAGATCAATGCGAGTTTGGTGTTGATGTCATTGTTGCTGCACCTCCTACTA  1495

Query  450   ATTGGGAAATCCTTTCTTTTGATGAAAAAC-ACGTTTATCCTTATAAGATCTCTTGGCCT  508
             |||||||||| |   ||||  |||||  || | ||  | ||  | | | ||| |||| | 
Sbjct  1496  ATTGGGAAATTCACACTTTACATGAAGCACTAAGTCAACCC--A-A-GTTCTTTTGGACG  1551

Query  509   GTTAAGAATATCTTTGAGAT-A-C--TAGGGCATTGTCACACATCACAAAGATTTT-C-A  562
             || |||||| ||| |||| | | |  ||  |  || | ||||||||   | ||||| | |
Sbjct  1552  GTCAAGAATTTCTCTGAGCTGAACAATAATG--TT-T-ACACATCAGGCA-ATTTTTCGA  1606

Query  563   GTGGGAGGAAAG-ACATGGGCTATAGAA-TTGTATCCCAAGGGA-A-GCAGAACAGCAGA  618
              || ||| |||| | ||||| | || || ||||||||||||||  | | | || || |||
Sbjct  1607  -TGAGAG-AAAGGAAATGGGTTCTA-AAGTTGTATCCCAAGGGGGACGTA-AA-AGGAGA  1661

Query  619   TTATAATAAATGGGTATCCATATT-TCTC-A-CTGCTGCTGATTGTGAAACACTTAAGGA  675
                 || || ||| ||||| | || |||  | || | | | |  |||||||||| |||||
Sbjct  1662  CCG-AA-AA-TGGTTATCCCT-TTATCTATATCT-C-GATCAAAGTGAAACACTAAAGGA  1715

Query  676   A-GATGAAAAGATTTTCACGCAAGCTTACTTGCGAATTTTAGATCCACGAGGATCCAATC  734
             | | |||||||||||||  ||||||| | |||||| ||||||| ||||| ||||||||||
Sbjct  1716  AAG-TGAAAAGATTTTCGTGCAAGCTCAATTGCGAGTTTTAGACCCACGTGGATCCAATC  1774

Query  735   ACTT-ATCACGCTCAATTACCAAATGCTACAACAAATCGAATTCATCTTGGGGATACTTT  793
             || | | ||| |  |||| |    || |||| ||  || ||| |  |||||||||||   
Sbjct  1775  ACGTGA-CACACAAAATTTCGTCTTGGTACACCAGCTCAAATACGGCTTGGGGATACAGA  1833

Query  794   CGATTTGTGTCTATAGATGAACTTAGGAATA-CTTACTTGGACATGGA  840
               |||||||||| ||| |||| ||   || | |||||||||||| |||
Sbjct  1834  AAATTTGTGTCTCTAGCTGAAATTCCTAA-AGCTTACTTGGACAAGGA  1880



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45160498153


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5