BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933103

Length=664
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G61530.1 | Symbols:  | small G protein family protein / RhoG...   737    0.0  


> AT5G61530.1 | Symbols:  | small G protein family protein / RhoGAP 
family protein | chr5:24742048-24744784 FORWARD LENGTH=1569
Length=1569

 Score =  737 bits (399),  Expect = 0.0
 Identities = 450/475 (95%), Gaps = 2/475 (0%)
 Strand=Plus/Plus

Query  155  GCAGCCGGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTGCTGCCACAACCGG  214
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  435  GCAGCCTGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTGCTGCCACAACCGG  494

Query  215  GACCTTGGTCAGGAAGGGTATAACTGAGACAAAGGAAAAGGTTTCCGTTGGAAAGATCAA  274
            ||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  495  GACTTTTGTCAGGAAGGGTATAACTGAGACAAAGGAAAAGGTTTCTGTTGGAAAGATCAA  554

Query  275  AATGGAAGAGGCAGCCAAAAAGACTGCACAAAAAAGCAAGACCATTTTGACGGACATCGA  334
            | |||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct  555  AGTGGAAGAGGCGGCCAAAAAGACTGCACAAAAGAGCAAGACCATTTTGACGGATATCGA  614

Query  335  AAGGTGGCAGAAGGGAGTTGCCAGCTCAGATGTGTTTGGTGTTCCGATTGAGATCATTGT  394
            ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct  615  AAGGTGGCAAAAGGGAGTTGCCAGCTCAGATGTGTTTGGTGTTGCGATTGAGATCACTGT  674

Query  395  CCAGCGGCAAGAGTCAAGCAGGCCTATACCACTGATACT-GATTAAATGCGCAGATTATC  453
            ||||||||| ||||||||||||||||| || |||||||| | ||||||||||||||||||
Sbjct  675  CCAGCGGCAGGAGTCAAGCAGGCCTATTCCTCTGATACTAG-TTAAATGCGCAGATTATC  733

Query  454  TCATATTAACAGGGCTTAATTCACCGAACTTGTTCAAAGCCGAAGGAGATAAAAAGTTGA  513
            ||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct  734  TCATATTAACAGGACTTAATTCACCGAACTTGTTCAAGGCCGAAGGAGATAGAAAGTTGA  793

Query  514  TTCAACAATTGGTTTCTGCTTACAATCAAGATCCTAGTGCGTCAATACCTGAGGTTGTGA  573
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct  794  TTCAACAATTGGTTTCTGCTTACAATCAAGATCCTAGGGCGTCAATACCTGAGGGTGTGA  853

Query  574  ATCCAGTTGATGTCGATGCACTCATGAAATACTATCTTGCCACCCTTCCGACACC  628
            ||||||||||||||| ||||||| |||||||||||||||| | ||||||||||||
Sbjct  854  ATCCAGTTGATGTCGCTGCACTCTTGAAATACTATCTTGCTAGCCTTCCGACACC  908



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32099619933


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5