BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933109
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protei... 865 0.0
AT5G53010.1 | Symbols: | calcium-transporting ATPase, putative... 281 6e-75
> AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protein
of 46 kD | chr5:21485455-21487991 REVERSE LENGTH=1539
Length=1539
Score = 865 bits (468), Expect = 0.0
Identities = 556/594 (94%), Gaps = 24/594 (4%)
Strand=Plus/Plus
Query 2 ATTTTGAATTGTTGCCTGTGATGGGTGGTTTGGCTATGGAGGAAATGCCTTTATCGGCGC 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 103 ATTTTGAATTGTTGCCTGTGATGGGTGGTTTGGCTATGGAGGAAATGCCTTTATCGGTGC 162
Query 62 TATTCGAGCAAGCTAGGAAAATTCA------T-C-TC---G-C---------T---GATG 97
||||||||||||||||||||||||| | | || | | | ||||
Sbjct 163 TATTCGAGCAAGCTAGGAAAATTCATCTTGCTGCTTCAGAGTCTGGTGTTGATCAGGATG 222
Query 98 TTGTGAAGAAAGGATGTGAGATGTTTCAGAAGTGCGAAGACATGATCGGGAAGCTGGCGC 157
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 223 TTGTGAAGAAAGGATGTGAGATGTTTCAGAAGTGCGAAGATATGATCGGGAAGCTGGCGC 282
Query 158 TGTTTTCGTCTAACGAGACTAAAGAAGATATTAGCACCAACAATCTCAAATATCTTTTGG 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 TGTTTTCGTCTAACGAGACTAAAGAAGATATTAGCACCAACAATCTCAAATATCTTTTGG 342
Query 218 AACCTTATTACCTTGCGGAGTTGACAGAGAAAATCATACAGGACGACCGGATTCCGATTG 277
|||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 343 TGCCTTATTATCTTGCGGAGTTGACAGAGAAAATCATACAGGAGGACCGGATTCAGATTG 402
Query 278 TCAAAGCCTCGTATGCAAAGTTGAAGGAGTTCTTTTCGTTCTGTGAGGCAATGGAACTTG 337
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 403 TCAAAGCCTCGTATGCTAAGTTGAAGGAGTTCTTTTCGTTCTGTGAGGCAATGGAGCTTG 462
Query 338 TTCCGGATGAGGAGTTGGAGGCTTCTTCACGAGGAGGTTCTGGTGCACCTGCTGATCGAA 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 TTCCGGATGAGGAGTTGGAGGCTTCTTCACGAGGAGGTTCTGGTGCACCTGCTGATCGAA 522
Query 398 GGGCTCTGAAGATAGCTCGGTTCAAACGTCAAAAGGCTGTAGAGGCAAAGCTTCTTGAAA 457
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 523 GGGCTCTCAAGATAGCTCGGTTCAAACGTCAAAAGGCTGCAGAGGCAAAGCTTCTTGAAA 582
Query 458 TTAAAGAGAGAAAGGAACGACGTGGACGTTCCACTAAAGCATCAGCTTTGTCGACTCCGG 517
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 TTAAAGAGAGGAAGGAGCGACGTGGACGTTCCACTAAAGCATCAGCTTTGTCGACTCCGG 642
Query 518 TTGAATCTGGAGAAGAAGATATTCCAGATGATGACAGCGAAGAAGAGAGAGAGG 571
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 643 TTGAATCTGGAGAAGATGATATTCCAGATGATGACAGCGAAGAAGAGAGAGAGG 696
> AT5G53010.1 | Symbols: | calcium-transporting ATPase, putative
| chr5:21488490-21496537 REVERSE LENGTH=3458
Length=3458
Score = 281 bits (152), Expect = 6e-75
Identities = 231/266 (87%), Gaps = 18/266 (7%)
Strand=Plus/Plus
Query 570 GGTTTGTAATGAGTTTGAAATCCAAAGTGTAGACCAAACCTTCAAAGAAATCCTTAGAGA 629
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2919 GGTTTTTAATGAGTTTGAAATCCAAAGTGTAGACCAAACCTTCAAAGAAGTCCTTAGAGA 2978
Query 630 GAATATGTTTCTCGTCACAATAACCTCAACTATCATATCTCAAATAATCGTGATCGAGTT 689
||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 2979 GAATATGTTTCTCGTTACAATAACCTCAACTATCATATCTCAGATAATCGTGATCAAGTT 3038
Query 690 TGCCAG-CATTTTCATTTCTTCTGTCAGGCTAGACTTGAAAAAATGGGTGACGACAAGAC 748
|| || |||||||||| | | || | ||||||||||||||||||||| |
Sbjct 3039 CGC-AGGCATTTTCATT------G--A--CT----T-GAAAAAATGGGTGACGACAAGTC 3082
Query 749 TTTTGGGATTGCTCAGCCAAGTCGCCACTCGCTTCCCTTACCCAACCAACCAATTTTACC 808
||||||| || |||||||||||||||||||||| |||||||||| ||| ||||| | | |
Sbjct 3083 TTTTGGGGTTACTCAGCCAAGTCGCCACTCGCTACCCTTACCCAGCCATCCAATATCATC 3142
Query 809 CGTAACTGAGATTTGTCTTGCCATAT 834
||||||||||||| ||||||| |||
Sbjct 3143 -GTAACTGAGATTTCTCTTGCCGTAT 3167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40639424923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5