BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933115
Length=842
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protei... 965 0.0
AT5G53010.1 | Symbols: | calcium-transporting ATPase, putative... 292 3e-78
> AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protein
of 46 kD | chr5:21485455-21487991 REVERSE LENGTH=1539
Length=1539
Score = 965 bits (522), Expect = 0.0
Identities = 560/579 (97%), Gaps = 0/579 (0%)
Strand=Plus/Plus
Query 1 CTGTGATAGGTGGTTTGGCTATGGAGGAAATGCCTTTATCGGCGCTATTCGAGCAAGCTA 60
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 118 CTGTGATGGGTGGTTTGGCTATGGAGGAAATGCCTTTATCGGTGCTATTCGAGCAAGCTA 177
Query 61 GGAAAATTCATCTCGCTGCTTCAGAGTCCGGTGTTGATCAGGATGTTGTGAAGAAAGGAT 120
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 178 GGAAAATTCATCTTGCTGCTTCAGAGTCTGGTGTTGATCAGGATGTTGTGAAGAAAGGAT 237
Query 121 GTGAGATGTTTCAGAAGTGCGAAGACATGATCGGGAAGCTGGCGCTGTTTTCGTCTAACG 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 238 GTGAGATGTTTCAGAAGTGCGAAGATATGATCGGGAAGCTGGCGCTGTTTTCGTCTAACG 297
Query 181 AGACTAAAGAAGATATTAGCACCAACAATCTCAAATATCTTTTGGTACCTTATTACCTTG 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 298 AGACTAAAGAAGATATTAGCACCAACAATCTCAAATATCTTTTGGTGCCTTATTATCTTG 357
Query 241 CGGAGTTGACAGAGAAAATCATACAGGACGACCGGATTCTGACTGTCAAAGCCTCGTATC 300
|||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||
Sbjct 358 CGGAGTTGACAGAGAAAATCATACAGGAGGACCGGATTCAGATTGTCAAAGCCTCGTATG 417
Query 301 CAAAGTTGAAGGAGTTCTTTTCGTTCTGTGAGGCAATGGAACTTGTTCCGGATGAGGAGT 360
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 418 CTAAGTTGAAGGAGTTCTTTTCGTTCTGTGAGGCAATGGAGCTTGTTCCGGATGAGGAGT 477
Query 361 TGGCGGCTTCTTCACGAGGAGGTTCTGGTGCACCTTCTGATCGAAGGGCTCAGAAGATAG 420
||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 478 TGGAGGCTTCTTCACGAGGAGGTTCTGGTGCACCTGCTGATCGAAGGGCTCTCAAGATAG 537
Query 421 CTCGGTTCAAACGTCAAAAGGCTGCAGAGGCAAAGCTTCTTGAAATTAAAGAGAGAAAGG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 538 CTCGGTTCAAACGTCAAAAGGCTGCAGAGGCAAAGCTTCTTGAAATTAAAGAGAGGAAGG 597
Query 481 AGCGACGTGGACGTTCCACTAAAGCATCAGCTTTGTCGACTCCGGTTGAATCTGGAGAAG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AGCGACGTGGACGTTCCACTAAAGCATCAGCTTTGTCGACTCCGGTTGAATCTGGAGAAG 657
Query 541 AAGATATTCCAGATGATGACAGCGAAGAAGAGAGAGAGG 579
| |||||||||||||||||||||||||||||||||||||
Sbjct 658 ATGATATTCCAGATGATGACAGCGAAGAAGAGAGAGAGG 696
> AT5G53010.1 | Symbols: | calcium-transporting ATPase, putative
| chr5:21488490-21496537 REVERSE LENGTH=3458
Length=3458
Score = 292 bits (158), Expect = 3e-78
Identities = 233/266 (88%), Gaps = 18/266 (7%)
Strand=Plus/Plus
Query 578 GGTTTGTAATGAGTTTGAAATCCAAAGTGTAGACCAAACCTTCAAAGAAATCCTTAGAGA 637
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2919 GGTTTTTAATGAGTTTGAAATCCAAAGTGTAGACCAAACCTTCAAAGAAGTCCTTAGAGA 2978
Query 638 GAATATGTTTCTCGTCACAATAACCTCAACTATCATATCTCAAATAATCGTGATCGAGTT 697
||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 2979 GAATATGTTTCTCGTTACAATAACCTCAACTATCATATCTCAGATAATCGTGATCAAGTT 3038
Query 698 TGCCAG-CATTTTCATTTCTTCCGTCAGGCTAGACTTGAAAAAATGGGTGACGACAAGTC 756
|| || |||||||||| | | || | |||||||||||||||||||||||
Sbjct 3039 CGC-AGGCATTTTCATT------G--A--CT----T-GAAAAAATGGGTGACGACAAGTC 3082
Query 757 TTTTGGGATTGCTCAGCCAAGTCGCCACTCGCTTCCCTTACCCAACCAACCAATATTACC 816
||||||| || |||||||||||||||||||||| |||||||||| ||| ||||||| | |
Sbjct 3083 TTTTGGGGTTACTCAGCCAAGTCGCCACTCGCTACCCTTACCCAGCCATCCAATATCATC 3142
Query 817 CGTAACTGAGATTTGTCTTGCCATAT 842
||||||||||||| ||||||| |||
Sbjct 3143 -GTAACTGAGATTTCTCTTGCCGTAT 3167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41041298099
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5