BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933117
Length=1657
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23890.1 | Symbols: TOPII, ATTOPII | topoisomerase II | chr3... 784 0.0
> AT3G23890.1 | Symbols: TOPII, ATTOPII | topoisomerase II | chr3:8624750-8631327
FORWARD LENGTH=4824
Length=4824
Score = 784 bits (424), Expect = 0.0
Identities = 699/829 (84%), Gaps = 30/829 (4%)
Strand=Plus/Plus
Query 106 CAG-TTGAGCATATCCTACTTTGTCCTGATTCTTATATAGGATCGATTGAGAAACATACC 164
||| |||| || || || || |||||||| | || || ||||| || |||||||| |||
Sbjct 299 CAGCTTGAACACATTCTTCTCCGTCCTGATACATACATCGGATCTATCGAGAAACACACC 358
Query 165 CAAACGCTTTGGGTTTATGAGAAGGAAGAGATGGTTTGTCGTTCTGTTACTTATGTTCCT 224
||||| ||||||||||||||||| || ||||||||| ||| ||||||| ||||| |||
Sbjct 359 CAAACACTTTGGGTTTATGAGAAAGATGAGATGGTTCAACGTCCTGTTACCTATGTACCT 418
Query 225 GGATTGTATAAGATCTTTGATGAGATCCTTGTGAATGCTGCTGATAATAAACGGAGAGAT 284
|||||||||||||||||||||||||| || || || || |||||||| |||| |||||||
Sbjct 419 GGATTGTATAAGATCTTTGATGAGATTCTCGTAAACGCCGCTGATAACAAACAGAGAGAT 478
Query 285 CCGTCTATGGATTCTG-TCAAAGTTGTGATCGATGTTGAGAAGAATCAGATTAGTGTGTG 343
|| |||||||| | || |||||||||| ||||||||| |||||| ||||||||| ||
Sbjct 479 GCGAAGATGGATTCCGTTC-AAGTTGTGATTGATGTTGAGCAGAATCTGATTAGTGTTTG 537
Query 344 TAACAGT-G-G-T-GA-----TG--GAG-TTCCTCTTGAAGAAGGTGTTTATGTGCCTGG 391
||||||| | | | || || ||| ||| || |||||||| ||||||| || ||
Sbjct 538 TAACAGTGGAGCTGGAGTTCCTGTAGAGATTCATCAGGAAGAAGGAATTTATGTACC-GG 596
Query 392 -GAttttttttGGTCCTTGGTT---GAGTAGGAATTACGATTATAATGTTAAGAAGACTA 447
||| | ||||||| || ||| |||||| || |||||| ||||||| |||||||| |
Sbjct 597 AGATGATATTTGGTCATTTGTTGACGAGTAGTAACTACGATGATAATGTGAAGAAGACCA 656
Query 448 CTGGTGGAAGAAACGGATTTGGTGCTACGCTTACAAACATCTTCTCTACTGAATTCATTA 507
|||||||||||||||||| |||||||| |||||| || |||||||||||||||||||| |
Sbjct 657 CTGGTGGAAGAAACGGATATGGTGCTAAGCTTACTAATATCTTCTCTACTGAATTCATCA 716
Query 508 TAGAGATTGCAGATGGGAAGAGATCACTCAAGAAGTATAAGCGGGTCTTTGAAAACAATA 567
| |||| ||||||||||||||| ||||||||||||||||| ||||||||| ||||| |
Sbjct 717 TCGAGACTGCAGATGGGAAGAG---ACTCAAGAAGTATAAGCAGGTCTTTGAGAACAACA 773
Query 568 TGGGGAACAAGTCTAAACTATTTATAACCATGTGCAATAAGAGTGAGAATTGGACGAAGG 627
||||||| || ||| ||| ||||||||| ||| |||||||||||||| ||||||||||
Sbjct 774 TGGGGAAGAAATCTGAACCGGTTATAACCAAGTGTAATAAGAGTGAGAACTGGACGAAGG 833
Query 628 TTACATTCACGCCTGATTTGAAGAAGTTTAACATGACTGAATT-GGAGAACGATGTGGTT 686
||||||||| || ||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 834 TTACATTCAAACCAGATTTGAAGAAGTTTAACATGACTGAATTAGAAG-ACGATGTGGTT 892
Query 687 GCTCTAATGAGTAAGCGAGTGTTTGATATTGCTGGCTGTTT-GGGACAGACTGTCAAAGT 745
||||||||||||||||||||||||||||||||||| ||||| |||| || ||||||||||
Sbjct 893 GCTCTAATGAGTAAGCGAGTGTTTGATATTGCTGGATGTTTGGGGA-AGTCTGTCAAAGT 951
Query 746 TGAGCTGAATGAAAAACGAGTACCAATTAAGTCATTCAGTGATTATGTTGATCTCTACTT 805
||||||||||| |||| | ||||| | |||||||||| |||||||||||| || ||| |
Sbjct 952 TGAGCTGAATGGGAAACAAATACCAGTGAAGTCATTCACTGATTATGTTGACCTATACCT 1011
Query 806 AAGTGCCGCCAGTAAATCAAGGACTGA-G--CCTCTCCCAAGGATGAATGAGAAAGTTAA 862
|||||| || | |||||| ||||| || | |||||||||||| ||| ||||||||||||
Sbjct 1012 AAGTGCAGCTAATAAATCGAGGACGGAGGATCCTCTCCCAAGGTTGACTGAGAAAGTTAA 1071
Query 863 TGATAGATGGGAGGTTTGTGTGAGCTTAAGTGATGGACGGTTTCAACAG 911
||||||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct 1072 TGATAGATGGGAGGTTTGTGTGAGCTTAAGTGAAGGACAATTTCAGCAG 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81877088895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5