BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933118
Length=440
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23890.1 | Symbols: TOPII, ATTOPII | topoisomerase II | chr3... 226 1e-58
> AT3G23890.1 | Symbols: TOPII, ATTOPII | topoisomerase II | chr3:8624750-8631327
FORWARD LENGTH=4824
Length=4824
Score = 226 bits (122), Expect = 1e-58
Identities = 233/280 (83%), Gaps = 34/280 (12%)
Strand=Plus/Minus
Query 1 TCATCATCTTCATCGTCTTCAATGTCATCAAACTCAGACTCATTCCCAGATTCACTCTCC 60
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 4599 TCATCATCTTCATCGTCTTCAATGTCATCAAACTCAGAATCATTCGCAGATTCACTCTCG 4540
Query 61 GAATCACTCCAC-CACA---CATAC-CC-CCTATT--C-----G---C----A-A----A 95
||||||||| || || | ||| || |||||| | | | | | |
Sbjct 4539 GAATCACTCAACACATAGGTCATTTTCCTCCTATTAGCTCTTTGAGGCCTCGATATCGCA 4480
Query 96 -AA-CATCTCC---AGATTTCTCTGACGATGAGTTTCCAGCTGCATTCTCGCTGCTCTCC 150
|| ||||||| ||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 4479 GAAACATCTCCTCCAGATTTCTCAGACGATGAGTTTCCAGCCACATTCTCGCTGCTCTCC 4420
Query 151 TCTTCCTTATTA---GCCAACCTGCTCATCACTGAACTACTCTTCTTGTTAAACGGAGAC 207
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 4419 TCTTCCTTATTATCAGCCAACCTGCTCATCACTGAACTACTCTTCTTGTTGAACGGAGAT 4360
Query 208 GATCTCAGCTTCCTCACTTTCTTCTCCGGGGACACTACCA 247
||||||| ||||||||||||||||||||||||||| ||||
Sbjct 4359 GATCTCATCTTCCTCACTTTCTTCTCCGGGGACAC-ACCA 4321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20911383584
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5