BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933121
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protei... 1967 0.0
> AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protein
of 46 kD | chr5:21485455-21487991 REVERSE LENGTH=1539
Length=1539
Score = 1967 bits (1065), Expect = 0.0
Identities = 1186/1245 (95%), Gaps = 6/1245 (0%)
Strand=Plus/Plus
Query 18 TGTGATGGGTGGTCTGTCTATGGAGGAATTGCCTTTATCAGCGTTGTTCGAGCAAGCAAG 77
||||||||||||| || ||||||||||| |||||||||| | | | ||||||||||| ||
Sbjct 119 TGTGATGGGTGGTTTGGCTATGGAGGAAATGCCTTTATCGGTGCTATTCGAGCAAGCTAG 178
Query 78 GAAAATTCATCTCGCGGCTTCAGAGTCTGGTACCGATCAGGATGTTGTGAAGAAAGGATG 137
|||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 179 GAAAATTCATCTTGCTGCTTCAGAGTCTGGTGTTGATCAGGATGTTGTGAAGAAAGGATG 238
Query 138 TGAGATGTTTCAGAAATGCGAAGACATGATCGGAAAATTGG-GCTTGTTCTCTTCTAACG 196
||||||||||||||| |||||||| |||||||| || ||| || |||| || |||||||
Sbjct 239 TGAGATGTTTCAGAAGTGCGAAGATATGATCGGGAAGCTGGCGC-TGTTTTCGTCTAACG 297
Query 197 AGACTAAAGAAGATATCAGCACGAACAATCTCAAGTACCTTTTGGTGCCTTATTATCTTG 256
|||||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 298 AGACTAAAGAAGATATTAGCACCAACAATCTCAAATATCTTTTGGTGCCTTATTATCTTG 357
Query 257 CGGAGTTGACGGAGAAAATCATACAGGAGGACCGTATTCAGATTGTCAAGGCCTCATATG 316
|||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 358 CGGAGTTGACAGAGAAAATCATACAGGAGGACCGGATTCAGATTGTCAAAGCCTCGTATG 417
Query 317 CAAAGTTGAAGGAGTTCTTTTCGTTCTGTGAGGCAATGGAACTTGTTCCAGATGAGGAGT 376
| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 418 CTAAGTTGAAGGAGTTCTTTTCGTTCTGTGAGGCAATGGAGCTTGTTCCGGATGAGGAGT 477
Query 377 TGGAGGCTTCTTCACGA--A-GTTCTGGTGCACCTGCAGATCGAAGGGCTTTGAAGATAG 433
||||||||||||||||| | |||||||||||||||| |||||||||||| | |||||||
Sbjct 478 TGGAGGCTTCTTCACGAGGAGGTTCTGGTGCACCTGCTGATCGAAGGGCTCTCAAGATAG 537
Query 434 CTCGCTTCAAACGTCAAAAGGCTGCAGAGGCAAAGCTTCTTGAAATTAAAGAGAGAAAGG 493
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 538 CTCGGTTCAAACGTCAAAAGGCTGCAGAGGCAAAGCTTCTTGAAATTAAAGAGAGGAAGG 597
Query 494 AGCGACGTGGACGTTCCACTAAAGCATCAGCTTTGTCGACTCCGGTTGAATCTGGAGAAG 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AGCGACGTGGACGTTCCACTAAAGCATCAGCTTTGTCGACTCCGGTTGAATCTGGAGAAG 657
Query 554 AAGATATTCCAGATGATGACAGCGAAGAAGAGAGAGAGGCCTGGCTCTCCTCAATTAACT 613
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATGATATTCCAGATGATGACAGCGAAGAAGAGAGAGAGGCCTGGCTCTCCTCAATTAACT 717
Query 614 TGGCTATTTGTAAGGCTATTGATCTGTTGGAAATGCTAAAGAGAGAAGAGGAAATGCTCT 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TGGCTATTTGTAAGGCTATTGATCTGTTGGAAATGCTAAAGAGAGAAGAGGAAATGCTCT 777
Query 674 CTGCAATAAAGGAAAGACAGTTGAAGGATGGAGAGGATGGGTTCTCTCGGGATGCTCTTG 733
|||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||
Sbjct 778 CTGCAATAAAGGAAAGACAGTTGAAGGATGGAGAGGGTGGATTTTCTCGGGATGCTCTTG 837
Query 734 ATGATCGTACAAAGAAAGCTGAAACCTGGCACAGAGACGCTGCTGCAAGGATACAGTACT 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ATGATCGTACAAAGAAAGCTGAAACCTGGCACAGAGACGCTGCTGCAAGGATACAGTACT 897
Query 794 CTAAACCGGCACAACCAATCACTTGTGCCACATTTGCACAAGATGTGTTAGAAGGAAGAG 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CTAAACCGGCACAACCAATCACTTGTGCCACATTTGCACAAGATGTGTTAGAAGGAAGAG 957
Query 854 CTTCTGTATCACAAGGTCACGACCACAAGAACCAACCTCTTATATTCGGTCCAGCAAGCA 913
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 958 CTTCGGTATCACAAGGTCACGAACACAAGAACCAACCTCTTATATTCGGTCCAGCAAGCA 1017
Query 914 TCGTGGGTGGACCGCTCTCTACCGAGAGAGAGAGGATGATAGCTCAGGTTTTCCAACCAA 973
||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 1018 TCGTGGGTGGACCGCTCTCTACCGAGAGAGAAAGAATGATAGCTCAGGTCTTCCAACCAA 1077
Query 974 GTCACAGGATGCCAACAATGTGCATAGAGGATGCTGGGTTAACAGAGATGAACATAATGA 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GTCACAGGATGCCAACAATGTGCATAGAGGATGCTGGGTTAACAGAGATGAACATAATGA 1137
Query 1034 ATGATTGGCAAGAGCAGACGAAAAAAGCCATTGAAGAAGCAACGACCTCATGGTACAATG 1093
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1138 ATGATTGGCAAGAGCAGACGAAAAAAGCCATTGAAGAAGCAACCACCTCATGGTACAATG 1197
Query 1094 ATAAACCTCTGagaagaaaagaagaagacgaggaagatgatgatgaagacgaagaagCTG 1153
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ATAAACCTCTAAGAAGAAAAGAAGAAGACGAGGAAGATGATGATGAAGACGAAGAAGCTG 1257
Query 1154 TAATGAAAGCTAGAGCTTTCGATGACTGGAAGGACGATAATCCTCGTGGTGCAGGTAACA 1213
| ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 1258 TGATGAAAGCTAGAGCTTTCGATGATTGGAAGGATGATAATCCTCGCGGTGCAGGTAACA 1317
Query 1214 AGAAACTCACACCTTGTGGCTGAGACT-GAGACAGAGAGACACAT 1257
||||||||||||||||||||||||||| ||||| |||| ||||||
Sbjct 1318 AGAAACTCACACCTTGTGGCTGAGACTAGAGACCGAGACACACAT 1362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61796870895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5