BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933133
Length=316
Score E
Sequences producing significant alignments: (Bits) Value
AT5G34828.1 | Symbols: | Plant thionin family protein | chr5:1... 333 6e-91
AT5G36805.1 | Symbols: | Plant thionin family protein | chr5:1... 267 6e-71
AT5G36720.1 | Symbols: | Plant thionin family protein | chr5:1... 267 6e-71
AT5G38378.1 | Symbols: | Plant thionin family protein | chr5:1... 261 3e-69
AT3G24465.1 | Symbols: | Plant thionin family protein | chr3:8... 244 3e-64
AT1G58245.1 | Symbols: | Plant thionin family protein | chr1:2... 235 2e-61
> AT5G34828.1 | Symbols: | Plant thionin family protein | chr5:13094069-13094344
REVERSE LENGTH=276
Length=276
Score = 333 bits (180), Expect = 6e-91
Identities = 247/279 (89%), Gaps = 6/279 (2%)
Strand=Plus/Plus
Query 21 ATGGCGACTCAAACAATGAAAAAGATCTACAGTGTTTTGATGATTGTAGTTTTATTTACG 80
||||||||||||||||| |||||||| |||||||||||||| ||||||| ||||||||||
Sbjct 1 ATGGCGACTCAAACAATAAAAAAGATATACAGTGTTTTGATCATTGTAGCTTTATTTACG 60
Query 81 ATGATGGTTTCAACATACGCGAGTACGGTAGAAGTGTGTGTTAAGCATTGTGTCCCGAAT 140
|||||||||||||||| ||||||||| ||||| | |||||||| ||||||||||| |||
Sbjct 61 ATGATGGTTTCAACATTTGCGAGTACGATAGAAATATGTGTTAAACATTGTGTCCCAAAT 120
Query 141 CAGTGTATGAAAGT-TTCTAAAAAGGCAACTATTCTTTTATGTGAGAATGCTTGCAAAAA 199
||||| || ||||| || ||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 121 CAGTGCATAAAAGTGTT-TAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAAA 179
Query 200 ACTCTGCAACCAAGA-CAAATTTGCTCATGAGAAATACTACACAACT-CCTCCTGGAGAC 257
|||||||||||| || |||||||||||||| ||||| |||| | | | |||||| ||||
Sbjct 180 ACTCTGCAACCA-GAACAAATTTGCTCATGTGAAATTCTACTCCA-TGCCTCCTCAAGAC 237
Query 258 TTATGCGAGGttttttttGGGTTACTATGTAATAATTGA 296
|| ||||||| |||||||| |||||||||||||| |||
Sbjct 238 TTGTGCGAGGGATTTTTTGGTTTACTATGTAATAACTGA 276
> AT5G36805.1 | Symbols: | Plant thionin family protein | chr5:14488961-14489224
REVERSE LENGTH=264
Length=264
Score = 267 bits (144), Expect = 6e-71
Identities = 180/198 (91%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 21 ATGGCGACTCAAACAATGAAAAAGATCTACAGTGTTTTGATGATTGTAGTTTTATTTACG 80
||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCAACTCAAACAATAAAAAAGATATACAGTGTTTTGATGATTGTAGTTTTATTAACG 60
Query 81 ATGATGGTTTCAACATACGCGAGTACGGTAGAAGTGTGTGTTAAGCATTGTGTCCCGAAT 140
||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 61 ATGATTGTTTCAACATACGCGAGTACGGTGGAAGTATGTGTTAAGCATTGTGTCCCGAAT 120
Query 141 CAGTGTATGAAAGTTTCTAAAAAGGCAACTATTCTTTTATGTGAGAATGCTTGCAAAAAA 200
|| || |||||||||||| ||||||||||| ||| |||||||||| |||||||| ||||
Sbjct 121 CAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAAAA 180
Query 201 CTCTGCAACCAAGACAAA 218
|||||||| || |||||
Sbjct 181 CTCTGCAATGAAAACAAA 198
> AT5G36720.1 | Symbols: | Plant thionin family protein | chr5:14429661-14429924
REVERSE LENGTH=264
Length=264
Score = 267 bits (144), Expect = 6e-71
Identities = 180/198 (91%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 21 ATGGCGACTCAAACAATGAAAAAGATCTACAGTGTTTTGATGATTGTAGTTTTATTTACG 80
||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCAACTCAAACAATAAAAAAGATATACAGTGTTTTGATGATTGTAGTTTTATTAACG 60
Query 81 ATGATGGTTTCAACATACGCGAGTACGGTAGAAGTGTGTGTTAAGCATTGTGTCCCGAAT 140
||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 61 ATGATTGTTTCAACATACGCGAGTACGGTGGAAGTATGTGTTAAGCATTGTGTCCCGAAT 120
Query 141 CAGTGTATGAAAGTTTCTAAAAAGGCAACTATTCTTTTATGTGAGAATGCTTGCAAAAAA 200
|| || |||||||||||| ||||||||||| ||| |||||||||| |||||||| ||||
Sbjct 121 CAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAAAA 180
Query 201 CTCTGCAACCAAGACAAA 218
|||||||| || |||||
Sbjct 181 CTCTGCAATGAAAACAAA 198
> AT5G38378.1 | Symbols: | Plant thionin family protein | chr5:15344448-15344711
FORWARD LENGTH=264
Length=264
Score = 261 bits (141), Expect = 3e-69
Identities = 180/199 (90%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 21 ATGGCGACTCAAACAATGAAAAAGATCTACAGTGTTTTGATGATTGTAGTTTTATTTACG 80
||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAACTCAAACAATAAAAAAGATATACAGTGTTTTGATGATTGTAGTTTTATTTACG 60
Query 81 ATGATGGTTTCAAC-ATACGCGAGTACGGTAGAAGTGTGTGTTAAGCATTGTGTCCCGAA 139
|||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 ATGATGGTTTCAACCA-ACGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAA 119
Query 140 TCAGTGTATGAAAGTTTCTAAAAAGGCAACTATTCTTTTATGTGAGAATGCTTGCAAAAA 199
|| || |||||||||||| | ||||||||| ||| |||||||||| |||||||| |||
Sbjct 120 CCAATGCATGAAAGTTTCTCAGAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAAA 179
Query 200 ACTCTGCAACCAAGACAAA 218
||||||||| || |||||
Sbjct 180 ACTCTGCAATGAAAACAAA 198
> AT3G24465.1 | Symbols: | Plant thionin family protein | chr3:8894877-8895140
REVERSE LENGTH=264
Length=264
Score = 244 bits (132), Expect = 3e-64
Identities = 176/198 (89%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 21 ATGGCGACTCAAACAATGAAAAAGATCTACAGTGTTTTGATGATTGTAGTTTTATTTACG 80
||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAACTCAAACAACAAAAAAGATATACAGTGTTTTGATGATTGTAGTTTTATTTACG 60
Query 81 ATGATGGTTTCAACATACGCGAGTACGGTAGAAGTGTGTGTTAAGCATTGTGTCCCGAAT 140
||||| ||||||||||||||||||||| | |||||||||||||| || ||| ||||||||
Sbjct 61 ATGATTGTTTCAACATACGCGAGTACGATGGAAGTGTGTGTTAAACACTGTATCCCGAAT 120
Query 141 CAGTGTATGAAAGTTTCTAAAAAGGCAACTATTCTTTTATGTGAGAATGCTTGCAAAAAA 200
|| || |||||||||||| ||||||||||| ||| |||||||||| |||||||| ||||
Sbjct 121 CAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAAAA 180
Query 201 CTCTGCAACCAAGACAAA 218
|| ||||| || |||||
Sbjct 181 CTTTGCAATGAAAACAAA 198
> AT1G58245.1 | Symbols: | Plant thionin family protein | chr1:21584252-21584524
REVERSE LENGTH=273
Length=273
Score = 235 bits (127), Expect = 2e-61
Identities = 175/199 (88%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 36 ATGAAAAAGATCTACAGTGTTTTGATGATTGTAGTTTTATTTACGATGATGGTTTCAACA 95
||||||||||| | ||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAAAAAGATATGCAGAGTTTTGATGATAGTAGTTTTATTTACGATGATGGTTTCAACA 60
Query 96 TACGCGAGTACGGTAGAAGTGTGTGTTAAGCATTGTGTCCCGAATCAGTGTATGAAAGTT 155
|| |||||||| | |||||||||||||| ||||||||||| ||||| || |||||||||
Sbjct 61 TATGCGAGTACACTGGAAGTGTGTGTTAAACATTGTGTCCCAAATCAATGCATGAAAGTT 120
Query 156 TCTAAAAAGGCAACTATTCTTTTATGTGAGAATGCTTGCAAAAAACTCTGCAACCAAGAC 215
||| ||||||||||| | | ||| ||||| ||||| ||||||||||||||||| || ||
Sbjct 121 TCTGAAAAGGCAACTCTACCTTTGTGTGAAAATGCATGCAAAAAACTCTGCAATGAAAAC 180
Query 216 AAATTTGCTCATGAGAAAT 234
|| ||| ||||||||||||
Sbjct 181 AAGTTTTCTCATGAGAAAT 199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14678182708
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5