BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933137
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27290.1 | Symbols: | Protein of unknown function (DUF1279)... 961 0.0
> AT2G27290.1 | Symbols: | Protein of unknown function (DUF1279)
| chr2:11678400-11679797 REVERSE LENGTH=824
Length=824
Score = 961 bits (520), Expect = 0.0
Identities = 605/645 (94%), Gaps = 9/645 (1%)
Strand=Plus/Plus
Query 1 TGGTGGCTGaaaaaaaaCAAATGGCGATGATGCTTCTGCAAATCCCTCCTTCGTCTTCCT 60
||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 15 TGGTGGCTG-AAAAAAAC-AATGGCGATGATGCTTCTGCAAATTCCTCCTTCGTCTTCCT 72
Query 61 TGTTGAACACAACAAACCTTCAAATCCGATTCTTCTACTCTTCGA-TTCCAGCTTCCTCG 119
|||||||||| | |||||||||||||||||||||| ||||||| | || |||||||||||
Sbjct 73 TGTTGAACACCAGAAACCTTCAAATCCGATTCTTCCACTCTTC-AGTTTCAGCTTCCTCG 131
Query 120 AAGAAATTCAGATGCAGAGCCGTCCGTGAGAAGGCGGAGGAGATTGAGAAGAACACTTCG 179
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||
Sbjct 132 AAGAAATTCAGATGCAGAGCCGTCCGTGAGAAGGCGGAGGACATTGATAAGAACATTTCG 191
Query 180 TCGCCATctcctcctcctcctcctTCTTCCGCTGAAGAAGTTACCAAGAAATATGGCCTC 239
|||| ||| || ||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 192 CCGCCGTCTTCTTCTCCTCCTCCTCCTTCCGCCGAAGAAGTTACCAAGAAATATGGCCTT 251
Query 240 GAAGTTGGTCTATGGAAGATATTGAGCTCTAAGGATGATGAAGGAAGTGATGGAGAGGAT 299
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 252 GAAGTTGGTCTATGGAAGATATTAAGCTCTAAGGATGATGAAGGAAGTGATGGAGACAAT 311
Query 300 AAGAAGAAGAAATCAAAGACAGATGAGGCTAAAGAGTTGCTTGCTAAGTATGGTGGTGCT 359
||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 312 AAGAAGAAGAAATCAAAAACAGATGAGGCTAAAGAGTTACTTGCAAAGTATGGTGGTGCT 371
Query 360 TATCTCGCTACATCCATTACTCTTTCTCTCATTTCCTTTTCACTGTGTTATGTCCTTGTG 419
|||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 372 TATCTCGCTACATCTATTACTCTTTCTCTCATTTCCTTCTCACTCTGCTATGTCCTTGTG 431
Query 420 ACTTCCGGTGTTGATGTTCAAGCTCTTCTTCTAAAGGTTGGGATTTCGACGAATGAGACT 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 ACTTCCGGTGTTGATGTTCAAGCTCTTCTTCTAAAGGTTGGGATTTCGACGAATGAGACA 491
Query 480 GGAGAGAAAGTAGGGGCTTTTGCTTTGGCTTACGCAGCGCATAAAGCTGCATCTCCGATA 539
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 GGAGAGAAAGTAGGAGCCTTTGCTTTGGCTTACGCAGCGCATAAAGCTGCATCTCCGATA 551
Query 540 AGGTTTCCGCCTACGGTGGCTTTGACTCCTATTGTAGCCAGTTGGATTGGGAAGAAAGTG 599
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 552 AGGTTTCCGCCTACAGTGGCTTTGACTCCTATTGTAGCCAATTGGATTGGGAAGAAAGTG 611
Query 600 GACAAGGAGAAGGATGA-GT-A-GTAGCTTA-TTTCGGAGGTATT 640
||||||||||||||||| | | |||||||| ||| |||||||||
Sbjct 612 GACAAGGAGAAGGATGATGACAAGTAGCTTACTTT-GGAGGTATT 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30894000405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5