BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933138
Length=326
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08680.1 | Symbols: | ATP synthase alpha/beta family protei... 189 1e-47
AT5G08670.1 | Symbols: | ATP synthase alpha/beta family protei... 189 1e-47
AT3G51800.2 | Symbols: ATG2, EBP1, ATEBP1 | metallopeptidase M2... 163 8e-40
AT5G08690.1 | Symbols: | ATP synthase alpha/beta family protei... 158 4e-38
> AT5G08680.1 | Symbols: | ATP synthase alpha/beta family protein
| chr5:2821928-2824966 FORWARD LENGTH=2027
Length=2027
Score = 189 bits (102), Expect = 1e-47
Identities = 102/102 (100%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 225 AGGGTTTGTTGGATGGCAAGTACGATGATCTTTCCGAACAATCGTTTTACATGGTTGGAG 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AGGGTTTGTTGGATGGCAAGTACGATGATCTTTCCGAACAATCGTTTTACATGGTTGGAG 1688
Query 285 GTATCGATGAGGTGGTTGCAAAGGCAGAGAAGATCGCTAAAG 326
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1689 GTATCGATGAGGTGGTTGCAAAGGCAGAGAAGATCGCTAAAG 1730
> AT5G08670.1 | Symbols: | ATP synthase alpha/beta family protein
| chr5:2818117-2821176 REVERSE LENGTH=1976
Length=1976
Score = 189 bits (102), Expect = 1e-47
Identities = 102/102 (100%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 225 AGGGTTTGTTGGATGGCAAGTACGATGATCTTTCCGAACAATCGTTTTACATGGTTGGAG 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1583 AGGGTTTGTTGGATGGCAAGTACGATGATCTTTCCGAACAATCGTTTTACATGGTTGGAG 1642
Query 285 GTATCGATGAGGTGGTTGCAAAGGCAGAGAAGATCGCTAAAG 326
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 GTATCGATGAGGTGGTTGCAAAGGCAGAGAAGATCGCTAAAG 1684
> AT3G51800.2 | Symbols: ATG2, EBP1, ATEBP1 | metallopeptidase
M24 family protein | chr3:19211027-19213709 REVERSE LENGTH=1581
Length=1581
Score = 163 bits (88), Expect = 8e-40
Identities = 135/155 (87%), Gaps = 13/155 (8%)
Strand=Plus/Plus
Query 4 AAAG-GCAAACAGCGAGCATGTACAAGAATGCTAAGAAGAAGATTGAGAGAGATGTTGCT 62
|||| ||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 316 AAAGAGCAAACAGCAAGCATGTACAAGAATTCTAAGAAGAAGATTGAGAGAGGTGTTGCG 375
Query 63 TTCCCTACATGCATTTCTGTG------A----T--TCATTTCTCACCGCTTGCCAGTGAT 110
||||||||||||||||||||| | | |||||| ||||||||||| ||||||
Sbjct 376 TTCCCTACATGCATTTCTGTGAACAACACTGTTGGTCATTTTTCACCGCTTGCTAGTGAT 435
Query 111 GAGTCTGTGTTGGAAGATGGTGATATGGTTAAAAT 145
||||||||||||||||||||||| |||||||||||
Sbjct 436 GAGTCTGTGTTGGAAGATGGTGACATGGTTAAAAT 470
Score = 69.4 bits (37), Expect = 2e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 146 AAGGTGGCTGCAGCTTATGACTGCAAAATTGTTGAAGGTG 185
||||| ||||||||||||||||||||||||||||||||||
Sbjct 652 AAGGTAGCTGCAGCTTATGACTGCAAAATTGTTGAAGGTG 691
> AT5G08690.1 | Symbols: | ATP synthase alpha/beta family protein
| chr5:2825713-2828662 FORWARD LENGTH=2007
Length=2007
Score = 158 bits (85), Expect = 4e-38
Identities = 85/85 (100%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 242 AAGTACGATGATCTTTCCGAACAATCGTTTTACATGGTTGGAGGTATCGATGAGGTGGTT 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599 AAGTACGATGATCTTTCCGAACAATCGTTTTACATGGTTGGAGGTATCGATGAGGTGGTT 1658
Query 302 GCAAAGGCAGAGAAGATCGCTAAAG 326
|||||||||||||||||||||||||
Sbjct 1659 GCAAAGGCAGAGAAGATCGCTAAAG 1683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15180860198
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5