BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933142

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G27330.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   575    1e-163


> AT2G27330.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr2:11695032-11696630 REVERSE LENGTH=736
Length=736

 Score =  575 bits (311),  Expect = 1e-163
 Identities = 366/393 (93%), Gaps = 1/393 (0%)
 Strand=Plus/Plus

Query  1    AGCCACAGCTTCCAAGAGAAATGCTCAACCATTTCCTCTATCGCTCCTACATTCCTTTCC  60
            |||||| |||| ||| ||||||||||| ||| ||||| |||||||||| || |||| |||
Sbjct  49   AGCCACGGCTT-CAAAAGAAATGCTCACCCAGTTCCTTTATCGCTCCTTCACTCCTCTCC  107

Query  61   TCTTCTCCAGATCCTTCTCATCTACGCTTTTCGTTAAAGGCATATCTTTCTCAAGCACAG  120
            ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct  108  TCTTCTCCAGATCTTTCTCCTCTACGCTTTTCGTTAAAGGCATATCTTTCTCAAGCACTG  167

Query  121  AAGAAACATTAACCCAAGCCTTTTCTCAATATGGTCAAGTTCTCAGAGTGGATGTTATAA  180
            ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct  168  AAGAAACATTAACCCAAGCATTTTCTCAATATGGTCAAGTTCTCAAAGTGGATGTTATAA  227

Query  181  TGGATAAAATCAGATGCAGACCAAAAGGGATTGCTTATGTCACATTCTCTTCTAAAGAAG  240
            |||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct  228  TGGACAAAATCAGATGCAGACCAAAAGGGTTTGCTTATGTCACATTCTCATCTAAAGAAG  287

Query  241  AAGCCGGGAAAGCTTTATTAGAACTCAACGGCCAGTTGGTAGACGGGCGGGTCGTGATCC  300
            |||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct  288  AAGCCGAGAAAGCTTTATTAGAACTCAACGCCCAGTTGGTTGACGGGCGGGTCGTGATCC  347

Query  301  TTGATATAACAAAAGCTGGAAAACACAATACACCAGGCACCAAGCCGAAGCATGCAGGTG  360
            |||| | ||||||||||| |||||||||| |||||| ||||||||| || ||||||||||
Sbjct  348  TTGACACAACAAAAGCTGCAAAACACAATCCACCAGACACCAAGCCAAATCATGCAGGTG  407

Query  361  GTGATAGCTGATACTTCTCTTTTGTCAACTTGT  393
            |||||||||||||||||||||||||||||||||
Sbjct  408  GTGATAGCTGATACTTCTCTTTTGTCAACTTGT  440



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18548799381


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5