BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933148
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27370.1 | Symbols: | Uncharacterised protein family (UPF04... 1090 0.0
> AT2G27370.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr2:11708450-11710004 REVERSE LENGTH=943
Length=943
Score = 1090 bits (590), Expect = 0.0
Identities = 675/715 (94%), Gaps = 10/715 (1%)
Strand=Plus/Plus
Query 1 TCTTCTTCTTCTAAATTTTCTTCCATGGATATCGAAAAGGCAGCGAGCagaagagaagaa 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 76 TCTTCTTCTTCTAAATTTTCTTCCATGGATATCGAAAAGGCAGGGAGCAGAAGAGAAGAA 135
Query 61 gaagaaCCCATTGTTCAAAGGCCAAAGCTAGACAAAGGCAAAGGCAAA-GCTCACGTCTT 119
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||| || ||
Sbjct 136 GAAGAACCCATTGTTCAAAGGCCAAAGCTAGACAAAGGCAAAGG-AAAGGCTCATGTATT 194
Query 120 TGCTCCTCCTATGAACTACAATCGGATCATGGACAAACACAAGCAAGAAAAGGTTAGCGC 179
||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||| |
Sbjct 195 TGCTCCTCCTATGAACTACAACCGGATCATGGACAAACACAAGCAAGAAAAGATGAGC-C 253
Query 180 C-GCCGGGTGGAAAAGAGGTGTAGCGATCTTCGATTTTGTTCTTAGACTCATCGCAGCCA 238
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 254 CTGCCGGGTGGAAAAGAGGTGTAGCAATCTTCGATTTTGTTCTTAGACTCATCGCAGCAA 313
Query 239 TCACGGCAATGGCTGCTGCAGCGAAGATGGCGACAACGGAAGAGACTCTTCCTTTCTTCA 298
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 314 TCACAGCTATGGCTGCTGCAGCAAAGATGGCGACAACGGAAGAGACTCTTCCTTTCTTCA 373
Query 299 CTCAGTTCTTGCAGTTCCAAGCTGAATACACTGATCTACCAACTATGTCATCTTTTGTGA 358
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 374 CTCAGTTCTTGCAGTTCCAAGCTGACTACACTGATCTACCAACTATGTCATCTTTTGTGA 433
Query 359 TCGTGAACTCAATCGTGGGCGGCTACCTAACCCTCTCATTGCCTTTTTCCATTGTCTGTA 418
| || |||||||||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 434 TAGTAAACTCAATCGTGGGTGGCTACCTAACCCTCTCATTGCCTTTTTCTATAGTCTGTA 493
Query 419 TCCTCCGCCCTCTCGCGGTGCCTCCTAGGCTATTCCTGATCATATGTGACACGGCT-ATG 477
|||||||||| ||||||||||| |||||||||||||||||| ||||||| |||| | |||
Sbjct 494 TCCTCCGCCCCCTCGCGGTGCCGCCTAGGCTATTCCTGATCTTATGTGATACGG-TGATG 552
Query 478 ATGGGCCTCACCATGATGGCGGCATCCGCTTCTGCAGCCATAGTTTATTTGGCGCACAAC 537
|||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 553 ATGGGCCTCACCCTGATGGCGGCATCCGCTTCCGCAGCCATAGTTTACTTGGCGCACAAC 612
Query 538 GGGAATTCAAGCTCGAACTGGCTTCCGGTTTGCCAGCAGTTTGGTGACTTTTGCCAAGGA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 GGGAATTCAAGCTCGAACTGGCTTCCGGTTTGCCAGCAGTTTGGTGACTTTTGCCAAGGA 672
Query 598 ACGAGTGGCGCCGTGGTGGCATCCTTTATTGCTGCGACTCTTCTCATGTTCCTTGTCATC 657
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 673 ACGAGCGGTGCCGTGGTGGCATCCTTTATTGCTGCGACTCTTCTCATGTTCCTCGTCATC 732
Query 658 CTATCTGCATTTGCACTCAAGAGATCGACCTGAAAA-TTCGGATAT-ATCCTCTT 710
|||||||||||||| ||||||||| | ||||||||| || |||| | ||||||||
Sbjct 733 CTATCTGCATTTGCTCTCAAGAGAACAACCTGAAAACTT-GGAT-TGATCCTCTT 785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34410390695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5