BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933170

Length=506
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G27510.1 | Symbols: ATFD3, FD3 | ferredoxin 3 | chr2:1175807...   719    0.0  


> AT2G27510.1 | Symbols: ATFD3, FD3 | ferredoxin 3 | chr2:11758079-11759476 
REVERSE LENGTH=754
Length=754

 Score =  719 bits (389),  Expect = 0.0
 Identities = 466/502 (93%), Gaps = 9/502 (2%)
 Strand=Plus/Plus

Query  12   aaaaaaGAAATGGCGACTGTGCGAATTTCCTCCACTAGCATGACCAAGGCGGTTCTTAGA  71
            ||| ||| |||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct  77   AAACAAG-AATGGCGACTGTACGAATCTCCTCCACTAGCATGACCAAGGCCGTTCTTAGA  135

Query  72   AGCCAGACAACCAACAAGCTTATTGCCAACAAGAGCTACAACTTATCCATTGGATCAACG  131
            |||||||||||||||||||| ||| | ||||||||||||||||||||  |||||||||||
Sbjct  136  AGCCAGACAACCAACAAGCTCATTACTAACAAGAGCTACAACTTATCTGTTGGATCAACG  195

Query  132  AATAA-GGTTTCGAGATCTTTTGGTTTGAAATGCTCAGCGAATTC---TGGTGCCACGAT  187
            || || |||||||||||||||||||||||||||||||||||||||   |||||| |||||
Sbjct  196  AA-AAGGGTTTCGAGATCTTTTGGTTTGAAATGCTCAGCGAATTCTGGTGGTGCTACGAT  254

Query  188  GTCAGCGGTATACAAGGTTAAGCTCTTAGGACCCGATGGTCAAGAAAACGAATTTGAGGT  247
            ||| |||||||||||||| |||||||||||||| |||||||||||| | || ||||||||
Sbjct  255  GTCGGCGGTATACAAGGTCAAGCTCTTAGGACCTGATGGTCAAGAAGATGAGTTTGAGGT  314

Query  248  GCAAGATGACCAATACATCTTGGATGCAGCTGAAGAGGCAGGAGTTGACTTGCCTTACTC  307
             |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  315  TCAAGATGATCAGTACATCTTGGATGCAGCTGAAGAGGCAGGAGTTGACTTGCCTTACTC  374

Query  308  TTGCAGAGCTGGTGCGTGTTCCACTTGCGCGGGTCAGATTGTGTCGGGCAACGTTGACCA  367
            ||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct  375  TTGCAGAGCCGGTGCGTGTTCTACTTGCGCGGGTCAGATTGTGTCCGGCAACGTTGACCA  434

Query  368  GTCAGATGGTTCGTTTCTTGAGGATAGCCACTTGGAGAAGGGTTATGTGTTGACTTGTGT  427
            ||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct  435  GTCGGATGGTTCGTTTCTCGAGGATAGCCACTTGGAGAAGGGTTATGTTTTGACTTGTGT  494

Query  428  GGCTTACCCGCAGTCAGACTGTGTGATCCATACCCACAAGGAAACTGAACTCTTCTAAGT  487
            ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  495  GGCTTACCCACAGTCTGACTGTGTGATCCATACCCACAAGGAAACTGAACTCTTCTAAGT  554

Query  488  CAA-GTCTCT--ATTTGGTAAT  506
            ||| ||||||  ||||||||||
Sbjct  555  CAAAGTCTCTCTATTTGGTAAT  576



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24162624707


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5