BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933171
Length=1082
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28480.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain ... 1587 0.0
> AT2G28480.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr2:12176484-12178422 REVERSE LENGTH=1489
Length=1489
Score = 1587 bits (859), Expect = 0.0
Identities = 1025/1102 (93%), Gaps = 24/1102 (2%)
Strand=Plus/Plus
Query 1 TCTTCAGATGATTTAGCCCAAATTATGGCAATTGCTTTTGCTCGTGGATTTCGAAAAGCT 60
|||| ||||||||||| ||||| |||||||||||||||||||||||| || |||||||||
Sbjct 190 TCTTGAGATGATTTAG-CCAAACTATGGCAATTGCTTTTGCTCGTGGGTTGCGAAAAGCT 248
Query 61 TCATCTTTTCTTAGATCTTCATATCCAGTTCTCATTTCTTCCAGGTTGCTTCCTCA-ATG 119
|||||||||||| |||||||||||||| |||||||||||||||||||||||||| | | |
Sbjct 249 TCATCTTTTCTTCGATCTTCATATCCACTTCTCATTTCTTCCAGGTTGCTTCCT-ATAAG 307
Query 120 CCACGAGTTTTATGATTCAACATCG--ATGTT-ATCAATC-TCAAGACCGATATTTAGGA 175
||| ||||||||||||||||||| | || || || | | ||||||| |||| |||||
Sbjct 308 CCAAGAGTTTTATGATTCAACATTGACAT-TTGTTCTACCGACAAGACCAATATGTAGGA 366
Query 176 A--TT--TCA--GTCATGGTACGGTGAATCTTGTGATATCAGAAGGGAAACCAAAGTTTG 229
| || ||| || |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 367 ATTTTAGTCATGGTTATGGTACGGTGAATCTAGTGATATCAGAAGGGAAACCAAAGTTTG 426
Query 230 AAACTCGGGAGCTTGATCCTCCCaagaagtataagtggttgacgaaaaagcggttgaagt 289
||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 427 AAACTAGGGAACTTGATCCTCCAAAGAAGTATAAGTGGTTGACGAAAAAGCGGTTGAAGT 486
Query 290 tgaaaagaaagaaagaaagagaggaaaggaaTGCAGCTAATAGGAAAGACCCGCGGCGAC 349
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 487 TGAAGAGAAAGAAAGAAAGAGAGGAAAGGAATGCAGCTAATAGGAAAGACCCGAGGCGAC 546
Query 350 TTACTGTTAAAGGAAAGAAGAAAAAGTTTGTTAATGCAGAGGAAAGAATCAAGTACAAGC 409
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 547 TTACTGTTAAAGGGAAGAAGAAGAAGTTTGTTAATGCAGAGGAAAGAATCAAGTATAAGC 606
Query 410 TTGAAAAGGCGAAGATCAAAGAAGCGTTGCTGATTGAGAAACTAAAACGGTATGAAGTTG 469
|||||||||| |||||||||||||| ||||||||||||| ||| ||||||||||||||||
Sbjct 607 TTGAAAAGGCTAAGATCAAAGAAGCATTGCTGATTGAGAGACTTAAACGGTATGAAGTTG 666
Query 470 CGAAAGTGCAGGGACCTGAGGTTCGACCACATGAGATTACCGGGGAAGAACGTTTCTATC 529
| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 667 CAAAAGTGCAAGGACCTGAGGTTCGACCTCATGAGATTACCGGGGAAGAACGTTTCTA-C 725
Query 530 -TGAAGAAAATGGGTCAGAAAAGATCTAATTACGTACCGATTGGGAGAAGAGGAGTGTTT 588
||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| |||
Sbjct 726 TTGAAGAAAATGGGTCAGAAAAGATCCAATTATGTACCGATTGGTAGAAGAGGAGTATTT 785
Query 589 GGTGGTGTTATTCTAAACATGCATCTGCATTGGAAAAAGCATGAAACTGTTAAGGTTATT 648
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 GGTGGTGTTATTCTGAACATGCATCTGCATTGGAAAAAGCATGAAACTGTTAAGGTTATT 845
Query 649 TGCAATAATAGTAAACCAGGCCAAGTGCAACAATATGCAGAGGAGCTTGCTAAACTGAGT 708
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 TGCAATAATAGTAAGCCCGGCCAAGTGCAACAATATGCAGAGGAGCTTGCTAAACTGAGT 905
Query 709 GGTGGTGTGCCTGTTAACATCATCGGCGATGATACAATCATATTTTATAGAGGGAAGGGT 768
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 906 GGTGGTGTGCCTGTTAACATAATTGGCGATGATACGATCATATTTTATAGAGGGAAGGGT 965
Query 769 TATGTGCAGCCACAAGTTATGTCTCCAATCGATACACTATCGAAGAAAAGGGCATATGAA 828
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 966 TATGTGCAGCCACAAGTTATGTCTCCGATCGATACATTATCGAAGAAAAGGGCATATGAA 1025
Query 829 AAATCGAAGTACGAACAATCTCTTGAATCTGTGAGACATTTTATAGCAATTGCAGAGAAG 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 AAATCGAAGTACGAACAATCTCTTGAATCTGTGAGACATTTTATAGCAATTGCAGAGAAG 1085
Query 889 GAACTTGAGCTATATTACAGGCATGTTGCTCTTTACGATGACCCGAATAACAGAAACCCT 948
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1086 GAACTTGAACTATATTACAGGCATGTTGCTCTCTACGATGACCCGAATAACAGAAACCCT 1145
Query 949 CTTTCGATATTGGATGATTCTCCATCGGAATCACGTCAATACCATGACAATGAGCTTTAT 1008
|||||||| |||||||||||||||||||||||||||||| ||||||| |||||| ||| |
Sbjct 1146 CTTTCGATTTTGGATGATTCTCCATCGGAATCACGTCAACACCATGAGAATGAGTTTTTT 1205
Query 1009 CTGAGTTGTTCGGATACCGACGCTAATTCCGAAGATGAAG--G----TGAAGAGCTCTG- 1061
||||||||||||||||||||| ||| |||||||||||||| | ||||||||||||
Sbjct 1206 CTGAGTTGTTCGGATACCGACTCTAGTTCCGAAGATGAAGATGAAGATGAAGAGCTCTGT 1265
Query 1062 -AATTAGATAATGGTTCTTCTT 1082
|||||||||||||||||||||
Sbjct 1266 GAATTAGATAATGGTTCTTCTT 1287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53011775520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5