BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg933177 Length=300 Score E Sequences producing significant alignments: (Bits) Value AT2G28430.1 | Symbols: | unknown protein; Has 28 Blast hits to... 466 5e-131 > AT2G28430.1 | Symbols: | unknown protein; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:12159562-12160451 REVERSE LENGTH=496 Length=496 Score = 466 bits (252), Expect = 5e-131 Identities = 284/300 (95%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 1 TTCAATAAGAGAGTTTCCACCATGATCAGCATTCTCGCTCAGGAACGTCTTCTTGGTTTC 60 ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 44 TTCGATAAGATAGTTTCCACCATGATCAGCATTCTCGCTCAGGAACGTCTTCTTGGTTAC 103 Query 61 ACTCTTGGTACCGCTTTGACTGGGTTCGTCGTTTTTGAGCAGCGAAAACTCATCCATGAA 120 |||||||||| |||||||||||| ||| |||||||||||||| |||||||||||||||| Sbjct 104 ACTCTTGGTAGCGCTTTGACTGGATTCATCGTTTTTGAGCAGAGAAAACTCATCCATGAC 163 Query 121 TCTGTTTCTGATCCTAAATCTCAATCCGTTGATCAATCTCAGGTGAGAGATCGCATTTTC 180 || ||||| |||||||||||||||||| |||||||| |||||||||| ||||| |||||| Sbjct 164 TCCGTTTCCGATCCTAAATCTCAATCCATTGATCAAGCTCAGGTGAGTGATCGTATTTTC 223 Query 181 GGGAAGAAATATCGTATGGAATTTGCATCTCTGTGGAACAAAGCTGTGGATCAGACTTTT 240 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 224 GGGAAGAAATATCGTATGGAATTTGCGTCTCTGTGGAACAAAGCTGTGGATCAGACTTTT 283 Query 241 GAACCTGCAATTGAGTATCTTAGTTCACGTAAATGGTAGAGATGGATAAGTTCTTTGCTG 300 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 284 GAACCTGCGATTGAGTATCTTAGTTCACGTAAATGGTAGAGATGGATAAGTTCTTTGCTG 343 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13873898724 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5