BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933177

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G28430.1 | Symbols:  | unknown protein; Has 28 Blast hits to...   466    5e-131


> AT2G28430.1 | Symbols:  | unknown protein; Has 28 Blast hits 
to 28 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:12159562-12160451 REVERSE 
LENGTH=496
Length=496

 Score =  466 bits (252),  Expect = 5e-131
 Identities = 284/300 (95%), Gaps = 0/300 (0%)
 Strand=Plus/Plus

Query  1    TTCAATAAGAGAGTTTCCACCATGATCAGCATTCTCGCTCAGGAACGTCTTCTTGGTTTC  60
            ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  44   TTCGATAAGATAGTTTCCACCATGATCAGCATTCTCGCTCAGGAACGTCTTCTTGGTTAC  103

Query  61   ACTCTTGGTACCGCTTTGACTGGGTTCGTCGTTTTTGAGCAGCGAAAACTCATCCATGAA  120
            |||||||||| |||||||||||| ||| |||||||||||||| |||||||||||||||| 
Sbjct  104  ACTCTTGGTAGCGCTTTGACTGGATTCATCGTTTTTGAGCAGAGAAAACTCATCCATGAC  163

Query  121  TCTGTTTCTGATCCTAAATCTCAATCCGTTGATCAATCTCAGGTGAGAGATCGCATTTTC  180
            || ||||| |||||||||||||||||| |||||||| |||||||||| ||||| ||||||
Sbjct  164  TCCGTTTCCGATCCTAAATCTCAATCCATTGATCAAGCTCAGGTGAGTGATCGTATTTTC  223

Query  181  GGGAAGAAATATCGTATGGAATTTGCATCTCTGTGGAACAAAGCTGTGGATCAGACTTTT  240
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  224  GGGAAGAAATATCGTATGGAATTTGCGTCTCTGTGGAACAAAGCTGTGGATCAGACTTTT  283

Query  241  GAACCTGCAATTGAGTATCTTAGTTCACGTAAATGGTAGAGATGGATAAGTTCTTTGCTG  300
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  284  GAACCTGCGATTGAGTATCTTAGTTCACGTAAATGGTAGAGATGGATAAGTTCTTTGCTG  343



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13873898724


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5